Array 1 1015-1945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYUS01000001.1 Enterobacter kobei strain ECC3026 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1015 28 100.0 32 ............................ ATTAGCACTGCCGGCTCTCTCGTTTCATCGTC 1075 28 100.0 33 ............................ AAGATGGGCGAGGGTTGGGAAGTAGTGGTCATA 1136 28 100.0 32 ............................ GGAGAGGAGCTTATCGTAATAACGCGGAGGAC 1196 28 100.0 32 ............................ ATAACCAACCTCGCAAATAGAATAGAGCGCAA 1256 28 100.0 32 ............................ GCTGTGAGTTTTGGTGTCACCTGGCACAGTTA 1316 28 100.0 32 ............................ GGCTGGTCAGTAACCTGACCGTCCGAAATTTT 1376 28 100.0 32 ............................ GGCATCGGCCGCGCACACTTCAAATCGAAGAA 1436 28 100.0 32 ............................ TGCTGCGGTGCTGCTGCTAGCATGGCCACAAC 1496 28 100.0 33 ............................ GTGGAAGCGCGTGAAAAATTACGCTACAGACTT 1557 28 100.0 32 ............................ TCAGACCGAACAAAGAGACGCTGCGCACGTTT 1617 28 100.0 32 ............................ GACGTCATCACATACGCGGCCCACGTCACATC 1677 28 100.0 33 ............................ ACTTCGCGCAGGTGCCACGACTCCACGCCGATT 1738 28 100.0 32 ............................ ACCACTGCCCGCGACGTACACCCAGTGCGCCT 1798 28 100.0 32 ............................ AGTACGGGGCGAATATGTCAGAGTTCGCCCGC 1858 28 100.0 32 ............................ TCTACAGGACAAAACTGAATTACCAGCAGTCT 1918 28 75.0 0 .....................ACCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCTCAAACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGACAACGAAGCCGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGAGACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGCTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACCTGACGGGATTACTGCATGACATCACACATTCAATGGCGGCAGATGTGGTATCTCCTCATGATGCTGGAACGGGAAATTCTGTTATTTCTTGAGTGGAGTGCGCACCGCCAAGGGATGTCCCCTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCATTGATTTATAATGTTTGCTTTTACGTTGCAGAAAAAAGGGTTTAGCATGGTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCA # Right flank : CAAACCAACCCACTATAATATTCACCAAACCTATTTAAAACCTTATACCATTCAATCTGCACTCTCTGCTTCCACAATAAATAAAAAACCTATTCACGCATAAATTATATTCCATTGAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTTCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGCACATTCAACACCTTGAAATCAAAGCCCTTGCCATGTCCGTAAACAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAAGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTAATGCTGGGAATGGGAACCTCTGTTACACAAATGGCAATGCGGGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11763-12873 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYUS01000001.1 Enterobacter kobei strain ECC3026 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11763 28 100.0 33 ............................ CGAGATATTCGGGGCGCTGGACACGGGAGTCAG 11824 28 100.0 32 ............................ GCCACGAGCATCGCGCTCAAGCATACGCTGAA 11884 28 100.0 32 ............................ CACAAGGAAGATGATTAATGCAAATCAAACAC 11944 28 100.0 32 ............................ TCAACCCCAAATGTTGAGCGGCGCACCCCAGC 12004 28 100.0 32 ............................ ATGGAGTCAAACCGCAGGCGCCAGGCTGAGAT 12064 28 100.0 32 ............................ AAAATCACCGAAGTGGCGATCACTTCCGTTCT 12124 28 100.0 32 ............................ CTCGAGCATTTCGATAACTTCGCGGCGCTTGT 12184 28 100.0 32 ............................ TGAAGCGCCTGCCGCTCACTTTTATGCTGAGC 12244 28 100.0 32 ............................ TGAAATTTTTAATTTCGCGGGTGCAAAAAAAC 12304 28 100.0 33 ............................ CTCTTTGACTGGCTGAATACTCATCATTGCGCT 12365 28 100.0 32 ............................ TTTTTTGACACCCTACGCAGATTGCGAAGAAC 12425 28 96.4 32 ........T................... CGCCCGAGGTGATATCAATATATTTGCTAAAG 12485 28 100.0 32 ............................ GAAGGCGGAACGCTCGTTCGCAAACATCTCAC 12545 28 100.0 32 ............................ GCAGGTCACTAATCTGGGCGATATGACGCAGA 12605 28 100.0 32 ............................ TGAAAACTTTTGTCAGTTAGACCGTTTATGGA 12665 28 100.0 32 ............................ TTGTAAGTCGCTCACTATCCAGCGCCGCGAAC 12725 28 100.0 32 ............................ CGCATCAATACGCGCGGCGATCTGCGTCATAT 12785 28 100.0 32 ............................ AGTGATGGGGGATATTACGGCAAAGCCGTAAT 12845 28 92.9 0 .........A.....C............ | C [12870] ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGCTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGCTCATTAATTCCAGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGAATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCTGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCTGGGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATGAATGGAATGGGTGTTTTTTAAGCAGGGTGGTTTATAAGAAGAAGGGCGTTTGACCCTAATTTTTAGTGCGTTTGTAATGCATTGATTTTAAATGGATATTTTGAGAGGGTAAAAAAGAGGGTAAAAGATGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGGGGATATTATTTGA # Right flank : AATAGAAAATAAGGACTCCCCTCCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCAACAGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAATTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //