Array 1 112568-112268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTED01000002.1 Pasteurella multocida subsp. septica strain CIRMBP-0782 NODE_2_length_352828_cov_361.187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112567 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112501 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112435 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112369 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112303 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 176702-173973 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTED01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0782 NODE_3_length_192583_cov_333.824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176701 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176641 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176581 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176521 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176461 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176401 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176341 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176281 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 176221 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 176161 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 176101 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 176041 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 175981 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 175921 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175861 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175801 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175741 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175681 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175621 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175561 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175501 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175441 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175380 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175320 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175260 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175200 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175140 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175080 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175020 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 174960 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174900 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174840 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174780 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174720 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174660 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174600 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174540 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174480 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174420 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174360 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174300 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174240 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174180 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174120 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174060 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174000 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 111530-112817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTED01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0782 NODE_1_length_1072951_cov_357.778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111530 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 111590 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 111650 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 111710 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 111770 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 111830 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 111890 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 111950 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 112010 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 112070 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 112130 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 112190 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 112250 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 112310 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 112370 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 112430 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 112490 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 112550 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 112610 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 112670 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 112730 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 112790 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGAGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //