Array 1 10063-10632 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNXC01000061.1 Lactobacillus helveticus strain TJA10 NODE_61_length_10676_cov_43.949901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 10063 32 100.0 35 ................................ TTTCAAGCAAGATGCCAAACGCTAAGAAATTTAAG 10130 32 100.0 34 ................................ CATAAATCTGCACTATATAAGTGACCATCATAAA 10196 32 100.0 36 ................................ AGTATAGACAAGAGTATGTAAATGAATTTATAAACA 10264 32 100.0 36 ................................ TCCCACGGAATCCATGTACCTGTAGTCATAGAAGTG 10332 32 100.0 34 ................................ CACCATTTGGTTACGCCTTTCCAAGCGTTTTTAA 10398 32 100.0 38 ................................ AGTCCTATAGCACATTAAGGCATGACCGAGTTAATATC 10468 32 100.0 35 ................................ AGTCAACGTTTTTATAGCTTGAGTCAATAAAAGTG 10535 32 100.0 34 ................................ TTGAACCACTTAATAGTTGTACCGACTGACTTAG 10601 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTAGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : ACCTTTATTAGCTGTTAAATCACTTATATGGTAGAAAGTCGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-743 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNXC01000062.1 Lactobacillus helveticus strain TJA10 NODE_62_length_10626_cov_63.145985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 45 32 100.0 34 ................................ ATTTGACGAAAGCAACCTTGAAAATTGGATATAC 111 32 100.0 35 ................................ TTAGGAAATGCAATGAACGGGACACGTCCAAAATT 178 32 100.0 34 ................................ AGTTATAGGGACTCTAATAAATGTGTGGTTTGTC 244 32 100.0 35 ................................ TAATGCAGTCAAACGGTTAGCCAAGTTAGAAATAT 311 32 100.0 35 ................................ AACAACAGTATGGGAGTTTACAGGGCACAGTAAAC 378 32 100.0 34 ................................ GATTCCTCAACTAGCATTAGGGAGGAAACCTAAG 444 32 100.0 37 ................................ TTAGTAAGAATAAGGATTTCTTACACGAAATGCTTAG 513 32 100.0 35 ................................ TGGGTGCCATAGCGGATGTGGCACATAGACTTGGC 580 32 100.0 34 ................................ ATGAAAGTGTGCCATGATGCTGGTTACAAGGTAG 646 32 100.0 34 ................................ AGTAACTTGGTTAGATTTATAAAAAATAAGGGGT 712 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GATTGAAATAATTAATCCCTGATTATCCTGTTCCCAGTATGAGCG # Right flank : TTTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //