Array 1 31241-28888 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASAQ01000005.1 Streptococcus suis S33 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 31240 36 100.0 30 .................................... AACTAAAGCTAACTACAAACGTGAATTTTA 31174 36 100.0 30 .................................... TAAGAAAGCCCCAGACGCAGTTGCAGCAGG 31108 36 100.0 30 .................................... AATTTTGAATTTCTGCTGAGAGGAAGCTAG 31042 36 100.0 30 .................................... AGTTAACGGTCAGAGCGTATGGTCGTACGA 30976 36 100.0 30 .................................... AAGGTATAGACTTGCATTCCTCTATCCACT 30910 36 100.0 31 .................................... TGGAGGGGTGTTGAAAGCGGGGAGTAGGTGT 30843 36 100.0 30 .................................... AGAAAGCTGTATCAGAAAGACCTTCCTTCT 30777 36 100.0 30 .................................... TTAGAGACTTTGTCAGCCACCTTTTTTTCA 30711 36 100.0 29 .................................... TTTATTTGATTGAGGAGGACTAATGGACG 30646 36 100.0 30 .................................... TCCCTGTGTAGATTTGATTATTGCCTGTTT 30580 36 100.0 30 .................................... ACTAAAGCTAACTACAAACGTGAATTTTAC 30514 36 100.0 30 .................................... TTCCGTTCTTGTTTTTATTGTTGCCGCCGC 30448 36 100.0 30 .................................... TGAGCTGGCAATCCTCAATCAACTCATCCA 30382 36 100.0 30 .................................... TCTATCTCACTCACGAAAGCAAAGACGCAA 30316 36 100.0 30 .................................... TAAACCATAGGAAGCTGCACTGCCTGTTTT 30250 36 100.0 30 .................................... CTCTAGTGACCTTGAAATTGGTCAGATTGT 30184 36 100.0 30 .................................... CTACAGCTTCTGCGTTACGTTTACGGACTT 30118 36 100.0 30 .................................... TTTGATGATGTTGGCAAATTCTTCCTCTGG 30052 36 100.0 30 .................................... AATCACACCATTCGCAATTCCCGAACTTAA 29986 36 100.0 30 .................................... TTTCATCGAGTAGACTTTTAATGATATTCA 29920 36 100.0 30 .................................... TGCGGCTAAAAAAATACCCGCGACCACCGG 29854 36 100.0 30 .................................... TGTGGAAGCGCACAATGCAGAAGTTCGCAA 29788 36 100.0 30 .................................... TTACAGACTCCCCATTCACTAACTTCAATT 29722 36 100.0 30 .................................... ATTATGGTGCTGATGCTGTCTTCGTTGGGG 29656 36 100.0 30 .................................... TAAATTGTTTGAGTCCTACAAAATGTTGGA 29590 36 100.0 29 .................................... GGCTTCTTTAGCTTCTGGTTAAGTTTATA 29525 36 100.0 30 .................................... TCATTCGGCGATAAGTTAATGATTAAATAA 29459 36 100.0 29 .................................... TGAAAGTTGAAAATGCGGAGAAGAAATCT 29394 36 100.0 30 .................................... ATACTCTCTCTTTTGTCAATGTAGCAGACG 29328 36 100.0 30 .................................... CATTGGAACAAAAGCAAGCTATCTTGAATC 29262 36 97.2 30 .....................T.............. CTAGGTGCTGTAATTGATAAAAGTGAACTA 29196 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 29123 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [29114] 29055 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 28989 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 28923 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ===================================== ================== 36 36 98.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGATTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : TCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAATAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATATTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //