Array 1 383760-384702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 383760 29 100.0 32 ............................. TGCGGCAAGTCCTACGCCGCCGCCGCCTTCAG 383821 29 100.0 32 ............................. GCAGCGAGAGGCGAAGAACTCACCAAGGCCGA 383882 29 100.0 32 ............................. CGGGCGTGTAGGTAGCCCAGGTGGACGCGATC 383943 29 100.0 32 ............................. CACTCCGCCGCCAGAAGGGAGCGACCCAGTGA 384004 29 100.0 32 ............................. ACTTGGCCGCGGACACGGACTGCGCCCGGGTT 384065 29 96.6 32 ............................C ACCACGCTCTCAACGCGCGGGGCACGTGTCGT 384126 29 100.0 32 ............................. CGCATGTCCCGCGTAATGCGGCGCATGCGCAC 384187 29 96.6 32 ............................C ATTCTGAACCGCATCAAGGCCGCCCAGGAGGC 384248 29 96.6 32 ............................C TCGGACGCCTCGGCCTTGGTCAGCTCCTGCGA 384309 29 96.6 32 ............................C GACACCGACAACCCGGTCTGCGCGGACAGGCC 384370 29 100.0 32 ............................. CTTTCGCTTGGAGTTCGCGCTGTACCAGTACT 384431 29 100.0 31 ............................. GCACGCCGCGATCGTGTCGTCATCGGCACCG 384491 29 93.1 32 ..............T.............C CGTACCCGCTGGTACGAGATGCGCTGCAAGGC 384552 29 96.6 32 ............................C CATGAGGCAACCCACGAGCCGACCGCCGAGAT 384613 29 100.0 32 ............................. AAGGAGGGCTACTACAGCTCCTTTGACGGCAC 384674 29 86.2 0 ........................GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : CTCTGGAGCCTGCCGACACCAAGACGATGGCGGTCGTCTTCGCGGACCTGGCTCTAGCCGAGGGCATGAAGGGGGAGATCGAGCCGGCGGTGGTTTTCGCGGAGCAGTCCTTGTCCATCACACACCGTCGAGGCGGTGGCGCTGTCGCCCGGCGTCGCCTGCGTGACCTCGACAAGCTCCTACCCGACGAACCCCGTGGCCCCGTGGCCGAGCTTCGCGAACGGCTCCGCGAACTCCGCGACGCCGCGTAGAAATCGCTGAGAGGGATTTCCGCCCACCAGCGGCGAGGAGGTCACCACTCACGTCGCCGCCCGCGCCTGGCGGTGGGCGTCCGAGATGCGCGAGGTGGCTCGGACGATGTGGTCGCGCGATAGAAGCTGTCGTTCGGCTGGGTGGGCGGCGCTGGTCTGGTACGGGATGTCGTTCCGTCTGGTGGAACGGAATCGGTGATCTCGCTGCGGATCTCGCGCGCGGGCGTTTAACATCGCAGGTCAGGAAGT # Right flank : TACAGCGGTCAGGGCATGTCTTCTGTGTCGAACCGCACGGTCTGAGAGCCGCTCAGCCCAGACGATGGACGGCCCCCGCCCGGGATGCATGGGTGTGCGAGCCGGACAGAAGCCGCACCGCTCCCAGTACCCAGCCACCCGGGAGCAAGAACACCCCCGACAGCACCCCCGGCCAGATGGTCACGCGGCCCGCCCCGATGCCCGAGCCGGTGCGTCCGGCTACAGCCCGGCTTCCTTCCACCAACGGTCGCCGCGAAACGCTTCAGGGATCTTGTCATGGTCCTCAATGGGGTCGATCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAAGTCTTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCTGACTGTACGAGATCCCGTCCCGATACCTGATGCCCCATTCGCGGGACTTCGGGATGTAGAGGAGATACAGGTCCTCGTCCGCGACGGCGTAAGCCATCTGGTCGCAGCACTGGTCGTGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 389802-392389 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389802 29 100.0 32 ............................. CACGACCTGGAATTCGGCGAGCTGCTGAACAA 389863 29 96.6 32 ............................C TCGGGGGCACCCGTGGGCGGAACCGGTGACGG 389924 29 96.6 32 ............................C ACCGTGTGCTGGCAGGTCGCCGGGGCGGGCAC 389985 29 100.0 32 ............................. CCGACCCCCGCCGAGCTGGCCGACCTGGTAGG 390046 29 100.0 31 ............................. CAATTGGGAGCCGCATCGGGGACAGGGAAGC 390106 29 100.0 32 ............................. TGACCCGGTTCAGGCTGGGCCAGTTGCGTCAC 390167 29 100.0 32 ............................. TTGTGTTCCCAATGCGGGACCCTGCAAGAGTC 390228 29 100.0 32 ............................. GAGGCGGGCATGTCGGCGATGACGGCGGTCCG 390289 29 96.6 32 ............................C CTCGCGGTGACCTGCAGCGTGGCACGCCGGGA 390350 29 100.0 32 ............................. CCACAGTTGAAGCTCCTGGCCGAGGCGCTTGG 390411 29 100.0 31 ............................. GCCATGAGCACGCCCGCGTTCAAGGCGGACA 390471 29 96.6 32 ............................T CAAACCGTGTCCGTGCCGGTCAACTGGATCGC 390532 29 100.0 32 ............................. TTGGTTGACGGCGTTCCGGTACAGGGACATCG 390593 29 100.0 32 ............................. ATCTCCAGCAGTGGCACGCCCTTGCGTGGCAT 390654 29 100.0 32 ............................. GCGAGTTCTGGGCGCTCGGTGCCCCGCGCGAG 390715 29 100.0 32 ............................. CCGATCGGGTACCTGTACGAGCCGCCGGGGAC 390776 29 100.0 32 ............................. TTCCCCCAGATCGGCGCGACCGTGTCCGGGCG 390837 29 100.0 32 ............................. TTCTTCCGGATCGAGCACGAGCAGATCTACGA 390898 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 390959 29 100.0 32 ............................. GAGGCAACAGCACTACTTCGGTTCATGCGGGA 391020 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 391081 29 100.0 32 ............................. CCGAGTACCAGCGCGCGGAGAAGCACAGGCAA 391142 29 100.0 31 ............................. TCGTAGCCGAGATCCGCCTTGAGGTACTTGC 391202 29 100.0 32 ............................. GTGGCCCAGATCGGCGCGACCGGCACCGGAGA 391263 29 100.0 32 ............................. GTGTCCCGCCCGGCCTGAGTCGACAGGAAGAA 391324 29 100.0 32 ............................. GCAACGATGGCCTTGCCGACCTCTACGGGGCT 391385 29 96.6 32 ............................C GAGCGGGGCAGGATGGCCGTGGATCTGGAACT 391446 29 100.0 32 ............................. CCGAACGGGCGTATCCCACCAGGGCGGGGCAG 391507 29 96.6 32 ............................C GTGGCCTCGTGCCGGGCGACGGCGGCGGCGTA 391568 29 96.6 32 ............................C GCCGGGCTGAACGTAATGGTGGCGCTGGTGGA 391629 29 96.6 32 ............................C TAGGAACAGGGAGGCATACGCGCGCGCACGCG 391690 29 96.6 32 ............................C GCGCCGCGCGGCGGCTCTCCCAGGCCGTACTG 391751 29 100.0 32 ............................. GCGTTGCGCGAGGCCGGAGCCAGCCTCCGCAC 391812 29 100.0 32 ............................. CCGTGACCGGATCCGGGCCGCCGTCGGCTTCG 391873 29 96.6 32 ............................C GCTACGGTGAACGCTGAAATAACCCCGGTCGT 391934 29 100.0 32 ............................. ATTCACCGGGTGGCCGTGTGGGTGGAGATCGG 391995 29 100.0 32 ............................. ATGTCGCCGGGAACGCCGGAGCGGAGCACGAC 392056 29 100.0 32 ............................. TCGTCGTTGATCAGCGTTTCCCAGCTCAACGC 392117 29 100.0 32 ............................. CCCAGACACACCGACCACACGAGCGAGCTGAA 392178 29 100.0 32 ............................. CCGAACGGGCGTATCCCACCAGGGCGGGGCAG 392239 29 96.6 32 ............................C GTGGCCTCGTGCCGGGCGACGGCGGCGGCGTA 392300 29 100.0 32 ............................. GCGACCCGGGCCGCGGTGAGGGCGTCGGCCTC 392361 29 79.3 0 ...A..........T.........GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 43 29 98.6 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : GTCCTTCCAGAAGGCGAGCCGGGCGCTCGCGGCGGTCGCGCACGCTCTCGCCGAGGACTACGGCGTCGCGGGCGAACTCCGGGCGGAAGCCCAGCGGATGCCGGGGGACATCCTGGCGGATGTCGGCTACCTTCCGAGCGTCGCCGCCCGCGCCTGGCGGTGGGCGCCGGAGATGCGCGAGGTGGCTCGGACGCTGCGGTCGTGCGGCCTGCCCGGCGACCTTGCCCTGGCCGCGGCCGTCGTGCTGGAGCGCTGGCAGGGGGACAAGGACAGGTTCGACCTGCCGCTGCCCGAGGTGTTCGCGCACCTGCACCAGGCGGGCTGAGCTGCCGAAGGAGCGTGAGTGCTCTGGCCTGCCTGTGCGGTACGTGCGGCTGAGTGCTGTCGTTCGGGTGGGCGGCGCTGGTCCGATGCGAGGTGTCGTTCTGTCTGGTGGAACGGAATCGGTGATGTCGCTGCGGATCTCGCGCGCGGCCGTCTAACATCGCAGCTCAGGAAGT # Right flank : TGCAGCGGCCAGGACATGTCCCCCGCGTCGCCGCGGCCCGAGCAGTCCCCGGGGTGAGCTGTCAGGCGGCCCGCTGCGATACCCGACGCGGTGTGTCCGGCTACAAGCCGGCTTCCTTCCACCAGCGGTCGCTGTGAAACGCCTCGGGGATCTTGTCACGGTCGTCCCAGGGGTCGAGTCCAAGCTGTTCGACGCGGGTACGCCATTCGTCCCACAGGTCACCCGGTAGCTTCCTGCCGCACCAAGGGCAGTATCTGATCTGTTTGAACGAGAGCTCGTCCCGGTGGTCGATGCCCCATTCGCGGTACTTCGGGAGGTAGCAGAGGTGCAGGCCCTCGTCCGCGATGGCGTCCGCCATTTGGTCGCAGCACTGGTCGTGATCCTTGCTAACAGTCATCGTCTCTGAGCTTTCGGTCGGCTGGCCCTTTGATCATCTCGCCGGTATCCGGGTGGGCACTGCCCAGATGCTTTCGTGTTTTTTGCTGTAGACCTCCAGGTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 474685-474898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 474685 31 100.0 30 ............................... GTGCCGTCGGCGGCGTAGCGCTGGCGGACC 474746 31 96.8 30 .G............................. ATGCTGCCGATGTAGCCGGCTACGCCGGAG 474807 31 96.8 30 ..G............................ GGCGAGGTTGCCGTGGTCATGTGATCGTTT 474868 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================== ================== 4 31 98.4 30 TCCGGATCACCCCCACGCGCGTGGGGACGAC # Left flank : AAGGATTGGCTTGCCGACGTCCCTGAGCTGGAGGGCACGCACACCTGGGCGCGAAACCTGACGAGCCTGGACCGAGCCGTACGAGAGGCGATCGTTCTCGGTGCCGATCTGCCCGACGACGCGATGGACGACCTGGAACTCGACTACGAGTTCCGGACTGGTGACCCGGTCGTGGACTCCGAGTCCGCTGAAGTGCGGACGTGGCGCCGCAAACTCAGCGAGACCGAACGGCAGGTGGAGCGCCGCACCTATGGCCTGGTGGACAAGCTGGGAGCGCGTGGCTTGTCAGTGCGGGACGTCGCGGTGCTGGTCGGCTTGTCACCTCAGCGGGTGTCGCAGATCCACCACAAGAAGGCCAGCGTCGCCGCCGAGACGGCGAAGTCGAAGCGGTAGGCAGCGAAACCGTATCTTGCGAAGGTCCGGTGACTACTCACCCGGGCCTCTGCTTCTTTCCACAGGAGGCCGCCGGGCGTGGTCACAGGACGCCGCGGAGCGGGTTT # Right flank : CACTTCCTGACCTGGGATGTTACGCGCCTGATCGACGATTCGCGGGACAGTGTCGCCACCGGGTGCTTGACTGAGGCGCATGATCGAATCGGGGGACGGCGCGCGGCCGGACGTGCGGGCCGCGTGGGGGAAGGCGGAGAACGAGCCGGTTCCGCACCCGCTGATATGCCATGCGATCGACACCGCGGCCGTGGCCGAGCGGCTGCTGGGCGTGCTGGTGGGGCCACGCTGCCGGGAGGAGTTACGCGCCGCGTTCGCGCCGCTCGGCGACGCGGACGGCTGGGTCGCGGTCTTCTGCGGCCTGCACGACCTGGGCAAGTTCTCGCCCGTGTTCCAGGTGCAGCGTGTCGATCTGGCGAAACAGTTAGGCGAGCTGGTCAAGCACTACATTCAGCATTTGCTGCCGTTCCAGGGGGTGAAGGGGGTCGCTACCCCGCACGGACTGCTCACCACGGTCCACCTGGAGCGCTTGCTGGTGGAGTGGGGTGCCCCCAAGGATA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCGGATCACCCCCACGCGCGTGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 618590-618164 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 618589 30 100.0 34 .............................. ATTGAAGGCAAGTCCATCTACAACTTCGCCGGCG 618525 30 100.0 35 .............................. CTGTTGGTGACACTGCACCAACATCAGTCCCAGAG 618460 30 100.0 35 .............................. TTCGGCACCTGCCACGCGATCGCGACCGGAGCAAA 618395 30 100.0 36 .............................. TCGAAGAACGAGAACGCCATGTCGGTCATGTCCACG 618329 30 100.0 38 .............................. TTCGTGTTCTGCCCGCGCTGCCACCCGGGCGCGGTGGC 618261 30 100.0 38 .............................. GCGAGCTCGCGCACCCAGCGGCGGATGATCTGCGCCCG 618193 30 90.0 0 ...........................GGG | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.6 36 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : GAGGCGGGCGGCCGGGGCGCACAGCGCACCCGGCCCGCGCCGCTCGCGCCGGGCGTGCGGCCTGCCCGGCCGGTCCCGGCGCGGCGTCGCGGACCGGCCCGGCCGCCCGCCACACAGACAGCAGGCCGGTTGCCCGCCGCACGAACGGTGACCGTCGCCGCCCACCCGACAGGCGATCTTCGGGGCCGTCGCCTCCGCGTCAAGGCCAAGCCGCTTCGCGGTCGGCCTTGCGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCAGCGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGGGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCCTGATGCACGACCGGAGGTTCACTGCACATCCGGGCACGACCTATCCCGGTGGACACGTCCCCACCTGCGGCTTTACCATCGG # Right flank : GCGAGGCCGCCGGCCGGCCTCCCCCTCGGCGTCTTCCCCACGCACGTGGGGGTGAGCGACTGACACCAGTCCCGACACCAACGAGGGCGGATCCGGCTACACGGTGGCGGATCTCGGCGGAACCGAGACCCCCAGGTGAGAAGGCCGGGCACCCGAACGCGCGGGCTCGGCAGACAAGCCGTCAGCAGGTCGACAGGCCTGCCGTCTGACATCCATAAGTGACATCAACGCGGGTGGACTCTGGCTGCCTGCAAGGGGTTCCCGCAGACACTCCCCCGCCGGCCGAAGCGGGAGAGTTCAAGGTCCGAAAGAACTCCTAAAGCGGGTGTCGTAGGTTCGAATCCTACCGGGGGCACCATCTCTGACCAGCGCACATGCCCGGACGCGAGTCCGGGCATGTGGTTTGTGGAAGCGACTTGGGGCATAGACCGCCCGATCATGCCCGGGGTACGGCCGGCAGCGTCCGACCGTCCTGCCCTGTGAAGAGCCACCCAGGGGGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 5 3577499-3576813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3577498 30 100.0 34 .............................. ATCATCACTGCGCGTGTCACGGTATACACCCCCA 3577434 30 100.0 34 .............................. CCCACGAGGTGGGCGAGCAACACACCGAGCACGG 3577370 30 100.0 36 .............................. CCGCACAGCGGGCACGGGATGCGGGGGATCACGGGG 3577304 30 100.0 36 .............................. GCGACCAAGGTCACCAACACGGAGGAGCCCGTCGTG 3577238 30 100.0 36 .............................. ACGTGGCGCTCGTAGTCCAGCCGCCGGCGGCGGGCC 3577172 30 100.0 36 .............................. GCGAGTCCTGGCCGACGCTGATGTCCCCGGCGGAGA 3577106 30 100.0 37 .............................. GCGCGCCGAAACGCCCGAGCAGCGTCGGCGAGCTTCG 3577039 30 100.0 35 .............................. TTCAACGCCCGGATCTGGGCGGCCTTCTCATGGCT 3576974 30 100.0 35 .............................. CGCTTCTCGCTGAGCTCGGTGCCCAACAGCAAGCG 3576909 30 100.0 37 .............................. AGCAGCCGGCGAGCGTCCTGACTGTTCAGCGCGTTGC 3576842 30 90.0 0 ...........................GGG | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.1 36 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : GAGGCGGGCGGCCGGGGCGCACAGCGCACCCGGCCCGCGCCGCTCGCGCCGGGCGTGCGGCCTGCCCGGCCGGTCCCGGCGCGGCGTCGCGGACCGGCCCGGCCGCCCGCCACACAGACAGCAGGCCGGTTGCCCGCCGCACGAACGGTGACCGTCGCCGCCCACCCGACAGGCGATCTTCGGGGCCGTCGCCTCCGCGTCAAGGCCAAGCCGCTTCGCGGTCGGCCTTGCGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCTACGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGGGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCTTGATGCACGACCGGAGGTTCACTGCACATCCGGGCACGACCTGGCCCGGTGGACACGTCCCCATCTGCGGCTTTACCCTCGG # Right flank : GCGAGGCCGCCGGCCGGCCTCCCCCTCGGCGTCTTCCCCACGCACGTGGGGGTGAGCGACTGACACCAGCCCCGACACCAACGAGGGCGGACCCGGCTACACGGTGGCGGATCTCGGCGGAACCGAGACCCGCAGGTGAGAAGGCCGGGCACCCGAACGCGCGGGCTCGGCAGGCAAGGGGTCAGGGGTTCAAGTCCCCTCAGCTCCACAAGCTCGGTGGGCCACCGGAGATCTCCGGTGGCCCGCTGGCATATCAGGGGCATCGCCGGTACCGGCGCGCGGAGCGGCTGGGGGAAAGCGCCATCCGGGCGTGGGCGGTGAAGCGTCCCTGGTACCGGGTCGTCGCCGGAGGGCTGTCTCGTGATCCTGGCGGGGTCGCGGGAACGACAGTCGCCCATGATCTGTGATCTTCATCGGTCCTGGTGGAGCCCCTGAGCAATCGGAAGACCGAAGCTGAGGATGGCCTAAGCCTTGGTGCGGCGGTCCGCTTCGGAAGGGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 6 4371353-4370837 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4371352 28 100.0 33 ............................ GTCTCATACTTGCTGCTGGTAGCGGGCATGACT 4371291 28 100.0 33 ............................ CGCTCCCTTGCCGGTGCGCGCGGCCAGCCACGC 4371230 28 100.0 33 ............................ GGTGGAGACCCGGCAGGGTTTGGACGTCATGAC 4371169 28 96.4 33 ......................C..... CGTCGCCGCCATCCTGCGGGCGGTGTTCTCCGC 4371108 28 100.0 33 ............................ CGAAGCAGACGCGATCGAGGCTCACGGCGGTGT 4371047 28 100.0 33 ............................ CCCTGGTGCGGTGCTTATCGCTGAGACGCATGC 4370986 28 100.0 33 ............................ CACCAGGCCCTGCTCCGTCTGCGCGACCTCCCG 4370925 28 96.4 33 ................C........... CCGACTCGCGAGCGGCCGGTAACCGGGGTCCAG 4370864 28 92.9 0 ......T..G.................. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGATCC # Left flank : TAGAAACCGCGCTGCAGGCTGGTGATCACCCAGATGCCGGCCGGTCCACAACCGCCCGACAGGGCATAGAAACTCGTCCCCCCACAGGCTGACCTCGGTGGGCCGCCAGTCCACAACCGCCCGACAGGGCATAGAAACGCCTGGTAGGCGGCGGTCATACGCCGGGTGAGCCGTCCACAACCGCCCGACAGGGCATAGAAACATGATCGCGATCTCCCACGGCTCGGCGATGTCCACGTGTCCACAACCGCCCGACAGGGCATAGAAACCGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGTGTCCACAACCGCCCGACAGGGCATCCAGGTACAGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCGGGTCACGAAGT # Right flank : GCGAAAACCACCTCTGGCCAGCGGCTTTACCCTCGGGGTCCTCATCGCCCCCGCAAGAGATCGCAACCGGGCGATCGAGCGGGGAGCGTGGAGGAAACCGAACGAGCGTAGCGAGTGAGGTTTTCCGTAACGCTCACCACAGCTCGCTCTCCTCTGGCTCTCCTCTGGTCCTCATCATGGGCCTTACGAGGGAAGCGACCGCGCAACGGCAACGGCGACATACGCTGACCGCGCAGACGAGAGAGTCCCGGCCACGATGGCCGGGGCTTCGTCACAAGCGCGCATGTCGAATACGGTCAGAAGTTCCTGTCTGAACCGAGAAGGGCCAGGTCGGCGGCATGATCAGCGCGGTCTGTAAAACCGTCGGCGAAAGCCTACGCAGGTTCGAATCCTGCACCTGCCACCAGGGGCACCACCCAGCAAAGACGCAGCTCAGGGCCGGCCCCCGGCGAGTCCGGGGGCCGGCCCTGAGGCGTCTTCGGGTCACGGCCGTCACCGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4372214-4371515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4372213 30 100.0 36 .............................. CGTTTTACCGATGACTGTAGACAGCTCTACAGATCT 4372147 30 100.0 39 .............................. CCCGGCACGAAAGTCACGGTCGCTTCCATGGTGGGTCCT 4372078 30 100.0 38 .............................. GCGTGTGCAGCTTGACGTTGGGGTAGTAGGGGCTCGCG 4372010 30 100.0 37 .............................. AGCCGCATCGCGGCGAAGCGGATCGCGCCGGGGATGT 4371943 30 100.0 38 .............................. CTCGCGTTGAGCGCGGCTACCGTGGGGCGCACTCCCCG 4371875 30 100.0 36 .............................. CGCGCTGCAGGCTGGTGATCACCCAGATGCCGGCCG 4371809 30 100.0 35 .............................. TCGTCCCCCCACAGGCTGACCTCGGTGGGCCGCCA 4371744 30 100.0 34 .............................. GCCTGGTAGGCGGCGGTCATACGCCGGGTGAGCC 4371680 30 100.0 37 .............................. ATGATCGCGATCTCCCACGGCTCGGCGATGTCCACGT 4371613 30 100.0 37 .............................. CGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGT 4371546 30 93.3 0 ..........................GT.. | CC [4371521] ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.4 37 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : GGTGGACACTCAAGCGCGGCCACGAATACGTCCTGAAGCACGCACCCGGCGAGAACAACGCCGAGGCCCCGCTCCGCGCGTGCCGCATGGTCGTCTACGAACTCGCCGCCCCCACCCCGTAGGACGAGCCGGTGCCCTGAACCCCGCCGCAAAAACTGCACCCACCCGACAGTCGATCTTCAGGGCCGCCGCCTCCGCGTCAAGGCCAAGCCGCTTCGCGGTCGGCCTTACGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCAGCGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGGGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCCTGATGCACGACCGGAGGTTCACTGCACATCCGAGCACGACCTAGCCCGGTGGACACGTCCCCACCTGCGGCTTTACCATCGG # Right flank : AGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCGGGTCACGAAGTGTCTTCCCCACGCACGTGGGGGTGATCCGTCTCATACTTGCTGCTGGTAGCGGGCATGACTGTCTTCCCCACGCACGTGGGGGTGATCCCGCTCCCTTGCCGGTGCGCGCGGCCAGCCACGCGTCTTCCCCACGCACGTGGGGGTGATCCGGTGGAGACCCGGCAGGGTTTGGACGTCATGACGTCTTCCCCACGCACGTGGGGGCGATCCCGTCGCCGCCATCCTGCGGGCGGTGTTCTCCGCGTCTTCCCCACGCACGTGGGGGTGATCCCGAAGCAGACGCGATCGAGGCTCACGGCGGTGTGTCTTCCCCACGCACGTGGGGGTGATCCCCCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 4546135-4544765 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4546134 29 100.0 32 ............................. ACGGCCGCTCAGCACCCAGATGGCGATCTCGT 4546073 29 100.0 32 ............................. ACCGACCAGGACGCCCGCGGCGAGGAGGTCGC 4546012 29 100.0 32 ............................. AAAACGTCGGCATCTCAAGCTCAATGCCGGCC 4545951 29 100.0 32 ............................. TCGCCTTCGGCCCGATCGAGGCCGCTCTGGAA 4545890 29 100.0 32 ............................. GAGGAGTTCGCCCAGGTGTTGGCGTCGGGCCG 4545829 29 100.0 32 ............................. TTGGCCGAGGCGATGCGGCAGCTGAGCCCGGC 4545768 29 100.0 32 ............................. CCCGCGGCGACGTCCGCGCCGTGATCGCGCTG 4545707 29 96.6 32 ............................C GCAAGGGGCGGGCCGCCCCCAATGCGACCCGC 4545646 29 100.0 32 ............................. AAGCCTGGTCGTCGTAGCGGTGCTGGTCTCGA 4545585 29 100.0 32 ............................. ATCGCGAAAAACCAGCTCATTGATCATCGCCG 4545524 29 96.6 31 ............................A CCTGCGCCCGGCACAGGCGTCACCGGCTGCC 4545464 29 96.6 32 ............................T CTTCCGCATCACGTCGATCCAGATGTCGAGGT 4545403 29 100.0 32 ............................. CCGCCGAGCTTCGAGCAGGGCGTGCGCCGCAG 4545342 29 100.0 32 ............................. ACGGAGCAGGGCATGGTGTTCGCCGGGCGGGA 4545281 29 96.6 32 ............................C GCGGCGGCGGGATGTCCTACATCTCCCACAGC 4545220 29 100.0 32 ............................. ATCTCCGCGAACCCGGGGCCGAAGATCCGGCA 4545159 29 100.0 32 ............................. TTCGGCGGATCGATAGCCGATTTCGTGGTCAG 4545098 29 100.0 32 ............................. CCCAGCTCACGCGACGTAGCGGGCATAGGGTG 4545037 29 100.0 32 ............................. AGTCCTGCCGAGCGCGACGGGCTGGCTATGGA 4544976 29 96.6 32 ............................C CCGGACCCCCGGCCCGTGCCGACACTGCCGGT 4544915 29 93.1 32 .....................A......C TCCGCGTCGTCCAGTTCCGGCTCATCGGGGAG 4544854 29 89.7 32 .....A.....A.G............... ATCTCCTCGTCGGCCACCACCCGCCTGGACCT 4544793 29 86.2 0 ...........C.G....A....A..... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.9 32 GTCCTCCCCACGCACGTGGGGGTGAGTCG # Left flank : ACTACGGCAACGAGCCAGCCGACCTCGAGGAAAGCCCATGGTGACCAACCGACCTGGAGGGGACTGCCGGTGCCGTCCATGATGGTCCTCGCAGTGACCGCGGTCCCACCCCACGTCCGCGGCGCGCTCAGCCGATGGCTCGTCGAAGCAGCACCCGGCCTCTACGTCGGGTGCGTCTCCGGCCGCGTCCGTGAGGAACTGTGGACCACCGTCAGCGCAGTCATCGGCGACGGTGCCGCCGTCTGCGTTCACCCCGCCGACACCGAACAAGGCTACGAGCTGCGCACTGCCGGAACCCGCCGCCGCGAACCCATCGACCTCGACGGCCTCACCCTCATCCGCTTCCGAGCCCCCGAACAACCCACGAGCACACCTGAACCGGAGTTCCCCTGGTAGTGGCCCTGAAGAAACGAAAACGGCGTCACATCAGCCCTGGGCTGTCTGGCCGCGCGGACCTTGAAATCTGGCACCAGCGCCGGTAACGCCGCAGGTCAGGAAGT # Right flank : TAGGCGATCGCGCTGGTCAGGCCCGCGGCGCGTCCGCAGCCGACCACGCCCGCCCGGCTCTAGGCACCGTGGCCGCGACCGTGGCCCTGCTCGCCCTCGCCTGCGCCTGAGTCGCTCGCTACGACCTGTAGTGGCACTAGTCGGGCTCGCCCTCCAGCAGGGTCACGCCGCGGATGCGGTGGATGGGGAAGCTGTGGATGCGGCCCAGCTCCTCGTCGTACGCGCGCAGGTAGCCGCGGGCCACCCCGGTCGGGTACACGATGCGCGTGGCCGAGCGGCCCTGGTAGTCCACGTACGACAGCCGGACCGGCCGGTGGTGCTCGGCCGCCGCCGCCAGCGCGTCGATCAGCGCGGCGGTGTCCTCGCAGCCCACCTCGGCCGCCACCCCCAGGTCGCCGTCTGTGGCGGGGACCGCGGTGGCGACCCGGTCGCCGGACCGGATCATGCGCACGGCGGCGGCCAGCAGGGACTCCTCGGCGCGAGGCAGCTCGGCGACCACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4555248-4556924 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4555248 29 100.0 32 ............................. TCGGCCATGCGCGGCCGCGCGGTGAGTTCGGC 4555309 29 96.6 32 ............................C GTCCTCGACGCGAACATCTACTACCTGAACGA 4555370 29 96.6 32 ............................C CAGCAGAGCCAACAGCAGGGCCGCGCCCGCCA 4555431 29 93.1 32 ...........A................C GAGTCCTTGTCGGGCCGCTGAGTGGCCAGGAT 4555492 29 100.0 32 ............................. TCCCGTTCCCGGACGGGGGTGATCCGCAGTGA 4555553 29 96.6 32 ............................C ACAAGCTCCGCTTCTTCGCAAACGGCGCGACC 4555614 29 100.0 32 ............................. CCGCGCGAGGGCCGGGACGACAACCCGAGCCT 4555675 29 100.0 32 ............................. TTCGCCATGATGGTTCTCGCTCCTTTCGTGGA 4555736 29 100.0 32 ............................. CCCACCTGTACGGGCTCGGCTGGGAAAACGCC 4555797 29 100.0 32 ............................. TTCCCACCCAATGCCTGACCGTCTGTGCCCCG 4555858 29 100.0 32 ............................. CCGTAGTGCCGGCGGCGGCACCGCTGACCCCG 4555919 29 100.0 32 ............................. GCCGACTCCAAACAAATGGTGGCCTGGTACGG 4555980 29 96.6 32 ............................C ACGCGATGGTGCACATCCGCCACAGCGACGAC 4556041 29 96.6 32 ............................A TTTCTCCCCGGCGCGAGAGGGGGAACGTTCGG 4556102 29 100.0 32 ............................. CGATACCCGCCACGTTGCGACCCCTCGTAGGG 4556163 29 100.0 32 ............................. CGCCTCCAGGCCGAGAAGGAGGCGGAGAAGGC 4556224 29 100.0 32 ............................. TGGGCGAGGTTATCCGGTTTAGGCGTCCGGGT 4556285 29 96.6 33 ............................C GACCTCGACCTCGACGCCATCGAACAGCGCGAG 4556347 29 100.0 32 ............................. CCCGAGCTTTGGCGCCCGCCGCCGGGCGCGCC 4556408 29 100.0 32 ............................. CCCCCGACCACGGGGGAAATCGGGGGCCTCGA 4556469 29 96.6 32 .......................C..... AGGTCGCTGAGCAGGTGGACCGGCTGCTGGCC 4556530 29 96.6 32 ............................C GTGCCGTCCGGTAGCTCGACCTGTCGCATCGC 4556591 29 96.6 32 ............................A TTTCTCCCCGGCGCGAGAGGGGGAACGTTCGG 4556652 29 96.6 32 ............................C ACTCCGATTCAGGGCTTGCCCTACCCGAGCCT 4556713 29 96.6 32 ............................C GCGCTGTCGGTGGCGATGTCCGAGCTGGTAAG 4556774 29 96.6 32 ............................C GTCCACCGACCAGCCGAGCTGTCCGGCGTTGG 4556835 29 100.0 32 ............................. TCGTACCCGAGATCGCTTCGCAGGTACTTGCC 4556896 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.2 32 GTCCTCCCCACGCACGTGGGGGTGAGTCG # Left flank : GCCGCCATCGACCAGAGCGGCGAACGCATCGGGATTGATGGTTTGAAAACCCGGGATCGCCTTGCCGATGTCGTGCAAGCCCGCCCACAACGCAACCAGCCGGGCTGCCTGCTCTTCGTCGGCCAAGCCCAACCCGTGGGTGATCCGGCGTCGCTGCCCTGGCGACAACACCAGATCCCACAGCGCCAGCACCACCGCCGCCACGTCCGCCAGATGGCAGACCAACGGGTACGGCCGCGGCAGACCGCGTGACTTCCCCCACAACAACCCATCTACGCCGAGCGCCATCCCCCCGGCCTCGCCGGACCGCAGGGCCCCCGGCACCTCATGCTGATCGAGCACGCCCCCCTACCTACAGAACCGCGCCGACAACCCAGGTCCTTTGCTTATCTCCTCATCACCCGAACGGAGTAGCAATGGACGTAAATACGACAACAGCCCAGACGACTCCTGGCTTCAAAATCCGCACCCGGGTCCTGTAAAGTCGCAGGTCAGAAAGG # Right flank : TGGGAGACGGAGCGCTCTTGGCGTCTTGAACCGCCCGAGCGTTGGTCCGGAGAACCCAGGTTCTCCGGACCTCTCCTTGCTCCGTGGCACCCTCGCCGCCGGAACCATCCTCACCCATGACCGCCCGTACGGCAGCGAGGGCACCATAGCCCGAACACGCCGACTCTTCACATGGAGGAGGACCGGGCAGACACCGCTACGCTCGCGCCAGCCGCCCTGCCGCTGAAGTTAGGCGTTGGATCGCTGCGTCCGGCTACAGCTCGGCTTCCTTCCACCAACGATCCGTTTTCAGCTCCTCCGGGATCCTGTCTCGGTCCTCAAAAGGGTCGAGCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAGGCCCTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCCGACTGATCGAGACCCCGTCCCGGTAGTCGATGCCCCATCTGCGAGTCTTCGGGTGGTAGGAGATGAACAAGTCGGGATCTGCGATC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4818060-4817363 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4818059 30 100.0 37 .............................. GGTGTGGGAATCCTGGGCTGGATCGTCTCGGCCAGCG 4817992 30 100.0 36 .............................. GCAAGGGCGCCATGTACACCCGCCACAAGCCGCCGC 4817926 30 100.0 36 .............................. GGGTTCATGACCTTCAGCGCCGCGCGGGTGCCGATG 4817860 30 100.0 35 .............................. TGCTGGACCTTCAGCTCGGCCAACTGCAACTTCAG 4817795 30 100.0 37 .............................. GGGTAGCGGCGGATCACGGCGGCGAGCACTTCGTCCT 4817728 30 100.0 38 .............................. AGAGGATCTGTCAGCACTTCGCGGACAGGATCGAGGCC 4817660 30 100.0 37 .............................. GCCGGCAGCGAGGCGAGCAGTCGACGCGCGGCCTCCG 4817593 30 100.0 37 .............................. ATCTTGGAGATCATGGACTGTCCGACCCCCATGCGTT 4817526 30 100.0 37 .............................. TATGTGATGGTCGGCCCGCATCCGGCCGATGAGCGGC 4817459 30 96.7 37 ...T.......................... CCGCACCAGGTGCACTTGCCGGGGTATCGGGCCTCGG 4817392 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGCCCCGGCCTCCGCGCGTCCCGGGCAGCCGCCGGGGCGCGCGAGATCCGGGCTGACAGGCGCACACCATAGGGCCGCCCACCGGCCCGCAGCACACGAGCCCCCGCTTCCTCGCACACGCGAGGGCGCGCGATCGCTCGGGCGCGCGTGCGCGCGCACGCGAGGACGCACGAGAAGCCAGCCGCGGTTCGAGAGGCGGACACGTACCAGGGCACGCCCACCCTGGACCAGCCCGGCGAATCCGGAACGACCAGGAACAGGGCCCGGCCCCCCGACCACGGACTACGATCAACTCACCCTTCCCGCCGGCCGCGCCCGCGACCCCCACCGGCACTGGCCCAGGCGAACCCGAACCCATCCTGTGAAGGATCCTGTAAAGGTGTCCGGCCACGCCGTTCTGCAGCGACACGCCGAGGCCGCGTGCACGACCGGCGGTCCGCTGCAAAACCACCCTCGTTCCACCGAGGGAAACAACCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CAACCAGCGACCTGCGCCTGACTACCCGCACAGGAGCCGCTCTGCTCCTCCACGTGGCTATGTGGAGGAGCAGAGCGTGTTCGGTCCGCTCAGCCTGGTGGTAGCTGCCAGGCCCGGCCGGACTCGTGCCAGACCCACTGGCGTCCGGGGGTGACGGTGACCCCGAACGTCCACGGTCCGGGCCGGCCTTCCTTCAGCCACCACCGGTAGGTGTCGGCCACCAGGTCCCACAGCCGGCGTGGCCCGGCCTGCCGTACGGTCATCGCCGGGGTGTCCAGGCACGCGGCCGACCCGGTCGCCGGGTCGCGCAGCCACCAGCGGGTGGTGCCGTCCGCCAGGTCCTCCGCCCCCGCGACCACGCCGGGGATCGGCAAGCCCGCCAACCACAGGCGCAAGTTGGACTCGACCAGCTCGTGGGGGTCCAGCAGTGCCGGCTCCGGCTGCACCCCGGCCAGGTCCGGGGCCGTGGCCGCGCCGTCGGGGTCGCGGTGGCCACGCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 11 4878389-4876226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 4878388 30 100.0 38 .............................. CTGCGGCGGCGCGCCGCCCGGAGCCGCGCTCGCACCGC 4878320 30 100.0 35 .............................. AGGACTACCCGGGTGCGGGTGAAGTCGAGTGGCTT 4878255 30 100.0 35 .............................. CGTTACCAGCACCAGCTCCAGTGCCAGCTCCAGCA 4878190 30 100.0 35 .............................. GCCTCCTCTGCCATGAGGTGCAGCCGCCACGCGGC 4878125 30 100.0 37 .............................. CCGAGGTAGGCGCTGGCGGCGCGCAAGGCAGCCCAGG 4878058 30 100.0 36 .............................. ACTGGACCCGCGTCTGGCAGCGCTGGATGCGCACCG 4877992 30 100.0 36 .............................. ACGAGGGGGATGCGGGCGGGTTGGACGGTCACGCGG 4877926 30 100.0 36 .............................. GCCTCCCGGCGGGAGGTGGCCCGGCGGGAGATCGCG 4877860 30 100.0 36 .............................. AGCTCGACGTTCGCGGCGATGTGCTCAACGAGACGA 4877794 30 100.0 35 .............................. GCGTATGGGGGGCCACGACAACGACGGACCGCGAG 4877729 30 100.0 34 .............................. TCACCGGGCACACCCGGGATCAGGCGTGGCTGCA 4877665 30 100.0 36 .............................. GCACCGGCTGGACCCGGTGCCGCTTGCGGCCGTCAG 4877599 30 100.0 36 .............................. GGGGCCGGGCAGGTAGCGGCGCACGTTGGGGTTGCC 4877533 30 100.0 41 .............................. AGCTGAAATCCACGCTGCGGTTGGGTCCGAGGGCGTCCCGC 4877462 30 100.0 37 .............................. TGGGCGGCGAATCAGGACGTGGCGCCCGGCCCATGGA 4877395 30 100.0 36 .............................. ATAATGTCGAGCCGGGATTTCAGCTCGGCCAGGGTG 4877329 30 100.0 37 .............................. GTCCTCCTCTGTCATGGTGGGCTGCTGTGACGCCCGC 4877262 30 100.0 37 .............................. ACGAAATGGGGCGCCGTGTGGACAACGTCGCAGCAGA 4877195 30 100.0 37 .............................. CACAACCCACGCCCGCTGGAGGCCCGCAAGATCGCGG 4877128 30 100.0 36 .............................. GTGCCGGTGCCGTCGTCCTCACCGCCCGCGAACGAG 4877062 30 100.0 38 .............................. TGCAGCGGCGGGCGGATCCCGCGCCACGGATGCCCCGC 4876994 30 100.0 35 .............................. GGTGATGTGATCCACACTTGCCGGTGGTACGCCGG 4876929 30 100.0 37 .............................. TTCACTGCTCTCTCCTCTTGTCGCTAGGCGGATGGAT 4876862 30 100.0 35 .............................. GCTGCTCCGCCGTTGGAGCCGAGCCCAGGGAGTAA 4876797 30 100.0 36 .............................. AAGAACGGCACGGAGACGGCCCGCACAGAGCGCGTA 4876731 30 100.0 39 .............................. AGGACGGCGGCGACGCTAGCGCAGCGGGCCGGTAGGCCG 4876662 30 100.0 37 .............................. AGCGTGACCAGCACGGCACCTGGTCCCTCGAGTACCA 4876595 30 100.0 37 .............................. CCGGCGGCTCGCTGGTGTACATGCTGCCCCGCATCCG 4876528 30 100.0 39 .............................. TGCTGACGACGGTTTGGGTCAGGTAGCTGCGCTCGACCG 4876459 30 100.0 38 .............................. CGTTCTTCGCGGTTGAGATGTCACGCCGGGAGGTGGAG 4876391 30 100.0 39 .............................. GGGTGCCAAGTGCCACGGCCGGCCTTCAGGTCGATCGCG 4876322 30 96.7 37 T............................. CGCCCGCACGGCGCAGCATCCGCAGCCGGTGCGCCGG 4876255 30 93.3 0 T............................G | ========== ====== ====== ====== ============================== ========================================= ================== 33 30 99.7 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AGGTCTCCTACGACGAGCTACTGCACCTGGAAGCCCTCAAGCTCACCCGAGCCTGCCTGGAAGGCGAGCCCTACCGACCGTTCCGGATCTGGTGGTGAACCGTGTACGTCATCGTCGTCTACGACACCGCGGCCAAACGCAACCCCAAAGTGCTCAAGCTGTGCCGCAAGTACCTCCACCACATCCAACGCAGCGTCTTCGAAGGCCGACTCAGCGAAGCCCAACTCGTCAAGTTCCGCCACGAGATGGCCAGTTTGATCGACCACGGGTACGACCACGTCACGATCTACACCTTCCCCCCGGGCACCGCCCCGCAGCGCGTCCTTCTCGGCACCGGCCCGGGCGAACCCGAAACCATCCTGTGAAGGATCCTGTAAAGGTGCCCGGCCACGCCGTTCTGCAGCGACACGCCGGGGCCGCCTGCACGACCGGCGGTCCGCTGCAAAACCGCTCCCGTTCCACCGAGGGAAACAGCCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CGCAGGTGGCCTGGCCGGATTTCCCCCGTTCCCGGACAGCCAGCCCACCTGAAGGGCGTCGGAGGAGCTGTCAACCGGGCGCCGAGCGAACGGGTGAGCGAGCGCGCGGCGGCTTTGCCGACGCGCGACAGCCCGGTTGACAGCGGGGGAGGCGCCCGCAGGATGGGCGGTCCGGGAACGGGGGCACCCGGGGAGGCTCGCGCGGCGGCTCAGCCCGCAGGGCCGAACCGGGACGTACCCGGCTCGGCGGGCGCGCTGGTCCCGGTCGGGCATGGCTGCGGCCCCGTCCCGGGTGGGGGCGGGGCCGCCTCCGGCGGCCGCGCTATCGCACGGCGTGCGGGAAGTACGGGACGGTCCACCCGACGTAGCGGGCCCCCCACTTCTTCTCGATCAGGTCGGCGGGCACGATGTCGATGCGGCCCTTGGCCAGGATGTCGTTGCTCGCGATCAACCCGTCGCCGAGGTAGATCGAGACGTGGCCGGCGCGCTGTCCGGGGATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 12 4895566-4894869 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAXD01000001.1 Carbonactinospora thermoautotrophica strain H1 H1_chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4895565 30 100.0 37 .............................. GGTGTGGGAATCCTGGGCTGGATCGTCTCGGCCAGCG 4895498 30 100.0 36 .............................. GCAAGGGCGCCATGTACACCCGCCACAAGCCGCCGC 4895432 30 100.0 36 .............................. GGGTTCATGACCTTCAGCGCCGCGCGGGTGCCGATG 4895366 30 100.0 35 .............................. TGCTGGACCTTCAGCTCGGCCAACTGCAACTTCAG 4895301 30 100.0 37 .............................. GGGTAGCGGCGGATCACGGCGGCGAGCACTTCGTCCT 4895234 30 100.0 38 .............................. AGAGGATCTGTCAGCACTTCGCGGACAGGATCGAGGCC 4895166 30 100.0 37 .............................. GCCGGCAGCGAGGCGAGCAGTCGACGCGCGGCCTCCG 4895099 30 100.0 37 .............................. ATCTTGGAGATCATGGACTGTCCGACCCCCATGCGTT 4895032 30 100.0 37 .............................. TATGTGATGGTCGGCCCGCATCCGGCCGATGAGCGGC 4894965 30 96.7 37 ...T.......................... CCGCACCAGGTGCACTTGCCGGGGTATCGGGCCTCGG 4894898 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGCCCCGGCCTCCGCGCGTCCCGGGCAGCCGCCGGGGCGCGCGAGATCCGGGCTGACAGGCGCACACCATAGGGCCGCCCACCGGCCCGCAGCACACGAGCCCCCGCTTCCTCGCACACGCGAGGGCGCGCGATCGCTCGGGCGCGCGTGCGCGCGCACGCGAGGACGCACGAGAAGCCAGCCGCGGTTCGAGAGGCGGACACGTACCAGGGCACGCCCACCCTGGACCAGCCCGGCGAATCCGGAACGACCAGGAACAGGGCCCGGCCCCCCGACCACGGACTACGATCAACTCACCCTTCCCGCCGGCCGCGCCCGCGACCCCCACCGGCACTGGCCCAGGCGAACCCGAACCCATCCTGTGAAGGATCCTGTAAAGGTGTCCGGCCACGCCGTTCTGCAGCGACACGCCGAGGCCGCGTGCACGACCGGCGGTCCGCTGCAAAACCACCCTCGTTCCACCGAGGGAAACAACCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CAACCAGCGACCTGCGCCTGACTACCCGCACAGGAGCCGCTCTGCTCCTCCACGTGGCTATGTGGAGGAGCAGAGCGTGTTCGGTCCGCTCAGCCTGGTGGTAGCTGCCAGGCCCGGCCGGACTCGTGCCAGACCCACTGGCGTCCGGGGGTGACGGTGACCCCGAACGTCCACGGTCCGGGCCGGCCTTCCTTCAGCCACCACCGGTAGGTGTCGGCCACCAGGTCCCACAGCCGGCGTGGCCCGGCCTGCCGTACGGTCATCGCCGGGGTGTCCAGGCACGCGGCCGACCCGGTCGCCGGGTCGCGCAGCCACCAGCGGGTGGTGCCGTCCGCCAGGTCCTCCGCCCCCGCGACCACGCCGGGGATCGGCAAGCCCGCCAACCACAGGCGCAAGTTGGACTCGACCAGCTCGTGGGGGTCCAGCAGTGCCGGCTCCGGCTGCACCCCGGCCAGGTCCGGGGCCGTGGCCGCGCCGTCGGGGTCGCGGTGGCCACGCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //