Array 1 10032-10240 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDT01000021.1 Pseudoalteromonas prydzensis strain DSM 14232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 10032 29 100.0 31 ............................. AAAACGTTCTTTGCTCTGACTTGCTGCGTGC 10092 29 100.0 31 ............................. TTCTGGGAATTGGGCTTGATCAGTCATGGTT 10152 29 100.0 31 ............................. TCTATTATCAAAAAAACTAGAACCACAGAAA 10212 29 89.7 0 C..A......................G.. | ========== ====== ====== ====== ============================= =============================== ================== 4 29 97.4 31 AGTGACCTGCCGTATAGGCAGCTGAAAAT # Left flank : TTGTGGCTTTTTTAAAATAAGCCAAATTTTAGCCGTTCCTGACAGCTGCCAAGAAATACGTTTTATACGTAATCAGGCGGTAGCAAAAATATTTACAGGTGAAAGTAGAAGAAGATTAAAGCGTCTGCAAAAAAGAGCCTTAGCAAGAGGTGAAGACTTTAACCCTAAAAAGCTCGCAGCCCCACGTGAGGTTGATATTTTTCATAGGGTAGCCATGACTAGCAAGAGCTCACAAGAGGATTATATTCTTCATATTCAAAAGCAAAATGCCGACTGCCAAGCAGAGCCAGTCTTTAGTAATTATGGTTTTTCATCAAATGAAAAGTTTAAAGGCACGGTTCCTGATTTATCACCGTTTATAGAAAGCAATTAACCTTTATTTTTGTCACAATTATAAGTTATTGATATTAATGCGATATAAGCAAGCATTTTAAAAATGGGTAAAATTGAATTTGCTTTTTAATTATATGAATTATATAGATAAATTTAGCTATTTTGAT # Right flank : TAAAAACAATCGATTCGATGTTTAAGTTAATGTAATTCTGCCGAAAAGGCAGTGAGTAGTAATTGAAAAAAACAGTCTTATATTTAAAGGCTGGTTTTATATTTTTATTTAATAAGTAGATTTATATTTAAGGTTATTCACTCTGTTTTTAGAGAGTATTAAGTTTCCTAATTAATAACGGTAGGCTAACATCCTGTGAATAAGTAAAACATATTTGCTAGAAGTACAAATCAGTGGCCAAAATTAGTCGACCGCTAAACTACAAATTTATGATTAGCGCTAGGTTTAATATCGCTAGTTATACACATCTCTAAGCTTGCTAAAGTTATATTTAATATGGCACCTCAAGTAATTGGCTGATAGTCGGTTTAGAGAGAAAAACCGGTCATTGAAAAGTTAAACTTATTCCTGCTTTGATGAATAAGATTCTAGTTTCGTTCAATAACATTTTTAACCGCCGTTTTGGTGAAAAATAACCCTGTTAAATTTTATCTATTTTA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGACCTGCCGTATAGGCAGCTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.20,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 895728-893114 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDT01000001.1 Pseudoalteromonas prydzensis strain DSM 14232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================== ================== 895727 28 100.0 32 ............................ GTATCAATCTCTGATTTAGGTATGTAATCACC 895667 28 100.0 32 ............................ TAAAAAATGCAAAGTATGCTCGATTGATTTCG 895607 28 100.0 32 ............................ ATCACTACCAGACATGTTGCTAGTGCCGTTTT 895547 28 100.0 32 ............................ GCTATATAAAACTCAACAAACCCATCACTACC 895487 28 100.0 32 ............................ TTGCATGTGATGTCCGCCGACGTCTGAAATAA 895427 28 100.0 32 ............................ ACTATCACCTTTGTAAGTCAAACCATCAATAT 895367 28 100.0 32 ............................ TAGAGCTCCGCCTGTGCCTATTGATGCTAACC 895307 28 100.0 32 ............................ GTTTTAAAATGACCACAACAGAAATCCATATT 895247 28 100.0 32 ............................ TAATAAGCATTAAAGTTAGTGTGAATTTAATT 895187 28 100.0 32 ............................ TTTCTGGCAGCCGCTAACGATTCTTGAATTGA 895127 28 100.0 32 ............................ TGTGTGGCTCTTTCTAGCTGGGCGCGTTGTTT 895067 28 100.0 32 ............................ TGCAAGAGGCCCGTTACCGTGTCTCAGAGTTA 895007 28 100.0 32 ............................ TTCACTTCCAAGGGTGTTAGGGTTGGCGCTAG 894947 28 100.0 32 ............................ TTTCGGGTCATAGAACGCTTGAAAAGTAACGA 894887 28 100.0 32 ............................ TTCGGGTGGCTCTTCACCAATTTTGCTTATAA 894827 28 100.0 32 ............................ TGCAAGAGGCCCGTTACCATGTCTCACAGTTA 894767 28 100.0 32 ............................ AATCAATGGGCATGATTCGCCTGCAAGAGGCC 894707 28 100.0 32 ............................ TGACACTTGGTTGATAAATTGAATCTGAATAT 894647 28 100.0 33 ............................ GTAAACTCTTTTTGCTTTGTATTTTTGATAGCT 894586 28 100.0 32 ............................ TCATCAGTACAGAGAGCGCCTCCTGTAGCAAT 894526 28 100.0 32 ............................ TATGTGCAGGCATTTTATTTCTTTCAATTAAA 894466 28 100.0 32 ............................ ATCACAATCAACAATTCTGATAAAGTTATCCA 894406 28 100.0 32 ............................ ATTGACGTGTTTGAACTTACCATACGGTAATT 894346 28 100.0 33 ............................ CCAGTTGGTAAATACGAGTTGGCAGGTTCATCG 894285 28 89.3 107 .........................GTG ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGACGGATTCAAACGCCGATGTTAATTTAACAACA 894150 28 100.0 32 ............................ ATGCCATTCAAGCCAAAAAACAACTTGTTTAA 894090 28 100.0 32 ............................ TCTAGGGGGTGGTACGTTCAGCACCCTTGATT 894030 28 100.0 32 ............................ ATTTGTATCAAAGTTAAACTGAGTTTTTAGCG 893970 28 89.3 109 .........................GTG ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTGTTAACACCGTGGTTTGTTTGAAATTCA 893833 28 89.3 168 .........................GTG ACGAGGGACCGAAAGGGCATATCTAGTAAAGAGTGCAGCGCGAAGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTGTTAACACCGTGGTTTGTTTGAAATTCA 893637 28 100.0 32 ............................ TTTATCAAATGTCACTTTTATAGAACAATCAT 893577 28 100.0 32 ............................ ATTGCATTAATAGCGTTATTGAAATGCTGTGT 893517 28 100.0 32 ............................ ATTGACGTGTTTGAACTTACCATACGGTAATT 893457 28 100.0 33 ............................ CCAGTTGGTAAATACGAGTTGGCAGGTTCATCG 893396 28 89.3 107 .........................GTG ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGACGGATTCAAACGCCGATGTTAATTTAACAACA 893261 28 100.0 32 ............................ ATGCCATTCAAGCCAAAAAACAACTTGTTTAA 893201 28 100.0 32 ............................ GCAAACTTATCATTGTTTGCAGCGCGGCGGGC 893141 28 85.7 0 ...............T.........GTG | ========== ====== ====== ====== ============================ ======================================================================================================================================================================== ================== 38 28 98.5 42 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTTTAAATAAACTTCTACAAACTAACTGGTTAAAAGGGTTGCGGGATTATTGTGAAGTGAGCTCGATTTTACCTATACCAAGTAATGTGCAGTTTTGCATAGTGAGTAGAGTGCAGGCAAAAAGTGTATTCAACAAAAGAAAGCGCTCGGTAGCGAAAGGCTGGCTCACTGAGGACGAAGCAGCGGTTAAAGTCGGTGATACTCAGCAAAAAAGACTAAAGTTACCTTTTTTGCTGATAAATAGTTCATCGACACAGCAAAATAATGTAAAGCTTTTTATTAATCACGGAGAATTACAGCAAACACCAATATCTGGTGAGTTTAATTCATATGGATTAAGCAAAACCGCTACCGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATTTGATATAAAAACAATGAGTTATAATAGGTCGTTTTTTATAAGGTAAAATAGCAATATTTAACCTAACGGCTTGTTGTAACTTATTATTATGCTGGTATTCTATA # Right flank : ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTCAAACGCCGATGTTTTTTTTCGCGCCAGCAAGCTTAGCGCCTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGAAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGCTCTTCTACAAGCCACACTACGGATGCTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGCTACAAATTATTTCATGGTTTCTCATTTACCCTCATAGTCTGCTCTTTGTGCAAAAAATAGTTAAGTTCTAGGAAAATGACTAGGAGATCTGCATATTAGGAAACCTAATGAGCTGTTTTTAGCGAGTTTGGGTGATTTCTGATTGCTATTTATATTACATTTTGAGATATTATTTATAATATAATATTAACAGGATA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //