Array 1 4000281-4000582 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYP01000001.1 Rhodovulum sulfidophilum strain AB14 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 4000281 25 96.0 45 ........T................ TCGTGAAGCGAAGCATATGCTGGCCCTCCTTAGCCTGAAGGCACC 4000351 25 96.0 44 ........T................ CTCGCCGGGCATGTGCATCATGGACTGATCCTCCTGAAGGCGCA 4000420 25 100.0 43 ......................... CAAGCGCCGACTGCGTAAATTCGACTCGCAACCTGAAGGCGCA 4000488 25 100.0 45 ......................... ATTTCGCCACAACCAGACAATATAGTCCTTCGGGCTGAAGGCACC 4000558 25 76.0 0 .................GGC.TC.G | ========== ====== ====== ====== ========================= ============================================= ================== 5 25 93.6 44 TGTCCGCACCAAGGCGGATTGAAAC # Left flank : ATGCGGAACGCATGATACCCCCACCAAACCCCGTCCAATGGTTCCGGCGATTCGCAGAGGCGGGCAAGAATGGAATTCTCCGACGTTAAGGATTTTGTTGATTTCGAAAGAGTTCCCGTGCCGCGACAAATTGCGCAAGAGGGACGGCGACCCGGACCGGGGACTGCCAGGCACCGGGATGGCTCCGAACGGCGGCGCGCCCGTGGTTCTTTCGATGCGGTCGCAAACCGGACGGTTGCCCGCGGACCCAAGGCCTGTCTATGGTCGCGCCTGAAAGCAAACCCCCGCCGACCGGTTAACGAGGCGCGATCGGCCCCAAGACCTGGGGCAAACCAGGGCAATCACCTTCAGAAGGGCATCAAGTCATTGATCAAAAATGGGAAAGACACCTTATCTCTGCGCTACCAGCGTGGCCACCCAGCGCAGATCCTGTCGCCTTCAGAAGATGCGCGTTTTTTTCCTTTCCCTCCGCGGGATACAGGGACTAACCTGAAGGCACC # Right flank : GAACAGCCAGTAGCCTTCGTCGCTTTCGAAGGGGGCGCCGTCGCCGAAGACGCGGCTGCGCTGCTCACCGTCATGGCCGATGACGTAAAGCCGCAGGCTGTCGCCCTCACCCAGATGGGCCGCCAGACGCTGGCACAGCGCCTCGGCGCGGGCGCGGCTCATGCGGGTTTCGAACACCGAATATTGCACCCGCGTCGCCGCATCCTCCAGCAGGCGCGCGATCTTGCGCCGCCGCTTGTCCGACGAGACGTCGTAGCTGAAGACCGTCAGCATCTCGCCCCGGGACATTCACGCCTCCATCCGATAGGGGCGGAACAGCGCCGGATCGCCCGCGCGTAGCGCCTGGGCAAGGTCCTGGGCCTGACGCCGCATCATCGGCCGCCAGGCCAGCTTGTGGCTGCGATCCGGGACGTTGACCCGCCGCGCCACCGCCGTCTCATACCCCGCAATCAGCGCGCGCCGCCCTTCGGTCGAGATGCGGACCCCGCCGCCGACGCCCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGCACCAAGGCGGATTGAAAC # Alternate repeat : TGTCCGCATCAAGGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 4003043-4003360 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYP01000001.1 Rhodovulum sulfidophilum strain AB14 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4003043 37 100.0 30 ..................................... CCGAGGCCGCTGCTATCTGCATCGCGAGGA 4003110 37 100.0 39 ..................................... CTCCTGCCGGAGGCAGATAAGGGGAACGTATTCAATCCC 4003186 37 100.0 32 ..................................... TTCAACCATCGCTACCAGGCCGGTCAGTGCCG 4003255 37 100.0 32 ..................................... AAGGATTATGGGCCAAATGGGGATTCCTTTCA 4003324 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 34 GCTGAAGCCACCTGTCCGCATGAAGGCGGATTGAAAC # Left flank : GCGTCAGCACCATGGCCAGCGCCGTATGCACCACCCGGTCCGCCACGCTGGGGATCATCAGGCGCCGGTGCCCGCCCTTCTTCTTCGGAATATCGACCATACGGTAGGGCAGCGGCCGCCAGTCGCGGCGCTTCAGGGCCAGCCGCAACCTGCCCAACCGCGGGCCGGCCCCGGCCTGAAACACCGCGACCGTGACGCCGTCGCCGCCCGCGGCCCCTGCATTCGCGCGCACTTTCTCCCATGCGCGGTCGAGGCGGCGCAGTGAAAGCAGGCTTTGCCAAAGATCGTATTTCGGCGATAGAGGCATGGGCCGACCCGTCTTTGGGAAGGAAAAATGCGCAATCAGGTTCAGAAAATCAACAACTCACTGCGAACAAAACATAAAATACAGATCGCGCGTCAAACCCGGCGCAATTCAAACCCGGCATCGGGCCGGATCCGTCTTGCCTTCAGAACTGTGGCATTTTTTCGGCTTGAGCGAAAGGGATTGCAAGAGCTAG # Right flank : CGCGATCTGGTCGAACTCACCGGTGTTGAAGAGGTGAACGCCGGTCACTCCATTGAGCGAACCTGGCATCACAGGTCAGGCCACGCGATCTCGTCGTGATGCCGAAATCGCGGGCCTTTTTCCCGTTCCTCTCGCCCGCAGGAAACGTCAGCACGCAGAAAAACACGCCCCTTACCCGCTGGCGACAACGCAAGCGGCTTCAACCCGATTGCTTCGAGCTGATCACCGACACTCCGCGTGCCTTCCCCTTCGAATTCGGCAAGATGTTTGCAGGGGACATATCGCTCCAGGAAATGATCGACAGACTCGTAGGTCACAACCTTGATCGATTTCCGTGAGAGCGGGTGCCGTGCCCGAACTTGTGTCAGATAGCCCGTTTCCACCAAATACCGGACGGCAGATTCATTGATCCCCAGATAACGTGCCAGCGTGGACCGAAGGTACCCTTCTGGCTTGAGCAGGCGCAACGCCTCGGCAACCTCTTGCGGGTCCAGCCGCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAAGCCACCTGTCCGCATGAAGGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //