Array 1 49-2296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICA010000014.1 Wohlfahrtiimonas chitiniclastica strain DSM 106597 NODE_14_length_7414_cov_251.045523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49 28 100.0 32 ............................ AAGTTATGTTTGCCAAATCCCGATGCATCTTA 109 28 100.0 32 ............................ AATTAGTGAAATGACTTTTAAATCTGCCATGT 169 28 100.0 32 ............................ CTATAAAGTCTTTGGTGTTACCTAAGGGAGAA 229 28 100.0 32 ............................ ATTGTTTAGCTCTTCGAGCATGGTTTTAATCC 289 28 100.0 32 ............................ ACCGGCAATTTTGTCGACGTCGAGGAGAGAAA 349 28 100.0 32 ............................ TACTTCTCTTATTCAGTTGCTAAGACTTGCTG 409 28 100.0 32 ............................ GCGGATATAAACTGTATTGCGATCAATACTAA 469 28 100.0 32 ............................ GCAATGGCGTCATGTGCTTTATTCATCACCTT 529 28 100.0 32 ............................ TAACTTCTTGAAGCTTTGCTGTTGATTTCTCA 589 28 100.0 32 ............................ AAGCACGGCAGCCAACCTGGTGAGCAAGAACC 649 28 100.0 32 ............................ ATCTTTTTCCTCAACTATTTTCCAATGTTCTA 709 28 100.0 32 ............................ TTTTGGATGATGCTGTAATTCAATAAACGATA 769 28 100.0 32 ............................ CAAATGAAACTATTGGAAAAACTGAACCTGAA 829 28 100.0 32 ............................ CAAAATTTCAAAACCTCTCAAAACACGCCAAA 889 28 100.0 32 ............................ GATTGCCTTACAGCGTTGTGCAACTCTAACGA 949 28 100.0 32 ............................ ATCCCTGCTTCATCTAAGACGATTACAGTATC 1009 28 100.0 32 ............................ ATTATCACAAGACTTACCAAACCATTCTTTAG 1069 28 100.0 32 ............................ ACAAACGTCAATTTATCTTGCTTGCTCTGCGC 1129 28 100.0 32 ............................ GCGTGAACCAAAGCCCTTTGTTTGCACTGTCT 1189 28 100.0 32 ............................ AAACAAAAGAGATGTCTTAATTAACCCAAGCA 1249 28 100.0 32 ............................ AGCGGGATCTAATGAATATATTATTTACAACA 1309 28 100.0 32 ............................ ATCATGTCGTTTCTAATCACTTTTAAACGCTC 1369 28 100.0 32 ............................ CGAATGCAAGAGAAGTACAGCTCAAAATGCGT 1429 28 96.4 32 ......A..................... AATATCGCTGCGTTGTGGTTATAATAGTATAA 1489 28 100.0 32 ............................ GTCACTTGGTAGGCGTACTAAGCTGATCCCCA 1549 28 100.0 32 ............................ ATGCTGATTCCGCCTGTGACCTGCAATTCACC 1609 28 100.0 32 ............................ ACTCTCGAAAGAATGGCGGCTTATCTGCTTAT 1669 28 100.0 32 ............................ AAGCCGAATGCTTAAGCATAGAGCAACGGCGC 1729 28 100.0 32 ............................ AATCATACCTAAATTCTCGCCAAAAATGTTAA 1789 28 100.0 32 ............................ ACATTGGCATGCGCCGTTTTCATCTAAAGAAA 1849 28 100.0 32 ............................ GATTAATCCGAACACCGGGAAGCCATACTTTA 1909 28 100.0 32 ............................ GCTACAGGCTCTACATTGACCGATTTATCATC 1969 28 100.0 32 ............................ ATAAATCAGACACCTTTGCGGCGCCTTTGAAT 2029 28 100.0 32 ............................ GTGCAATCTGGACAACGCTACCGCGGGTTGCT 2089 28 100.0 32 ............................ AAAAAAGGCTATTATTATTATGTCTGTGCTCA 2149 28 100.0 32 ............................ AAGCTGCCCCAGCGCATCGGCATTTCGGATTC 2209 28 100.0 32 ............................ ACTGTGGCCACAATACTTGAGGATTGATCCCA 2269 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGCAGCTTAGAAAACCCGTAAAGAGTTTTAAATATATAAATATCAG # Right flank : AAGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGCACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCAGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATTGGTATCAATGCAGAAATTGAAAATAAAAATGAAATCTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCATTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGTGGACCTGAAGTTTGTACACCGCTTGAGCGCAATTCATCCATAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38098-38687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICA010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 106597 NODE_5_length_169703_cov_237.421097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 38098 27 75.0 173 .......ATG...A.C...-....T... GGTTGCGCCGTTGCAGGCGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATCAACTGCCGAAATCATGATGTTTCCAATGGCATTGTTATATTTTTAAA T [38102] 38299 28 100.0 32 ............................ TTTATCTTTGGCTAGATCATCAGCTTGTTCAT 38359 28 100.0 32 ............................ AATACGATTGATTGGGTAGATGAACAAAATCA 38419 28 100.0 32 ............................ TCCTTGGAATGTCTGGTAAAGAAACTGCCCGC 38479 28 100.0 33 ............................ CCGTTGAAGACATCCTGAAGCCGACTTATAACT 38540 28 100.0 32 ............................ TAATAACGTAGGTGGTGCTTTCGATATGTCGC 38600 28 100.0 32 ............................ TCAAATGCCACATCCCAGATGTTCTTGCCGTC 38660 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 8 28 96.9 52 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGTATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACATAAAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGTCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGATTTCACTGCCAC # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAACGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGCGCGCGAATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCGACGACGCTTTTGATCTGCGATGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCG # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-2.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 167528-169656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICA010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 106597 NODE_5_length_169703_cov_237.421097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167528 28 100.0 32 ............................ ACTATAAGCATACGTTTATACCACCAATGGAT 167588 28 100.0 32 ............................ TCAAAACACTACATGAGCGCTCAGGCAGTACA 167648 28 100.0 32 ............................ TCTCAATCTATCCAAGCTATCTTTAGCTAACT 167708 28 100.0 32 ............................ AAGCTAGTATCTCAACACTTAGAAAAGGAACT 167768 28 100.0 32 ............................ AAGAATCAGTTGCGTTTACTGCGGGATATAAC 167828 28 100.0 32 ............................ TGAGTTACTTAAAGCATCAGAATCACAGGCTA 167888 28 100.0 32 ............................ TTTTGAAACAATAAAATACCACTTATTAAAAG 167948 28 100.0 32 ............................ ACGCAAGCGAAAGGCTTCTTGTCGTTGTCCGT 168008 28 100.0 32 ............................ ACTAACCAACTATCACTTTTGTGCAGTCAAAA 168068 28 100.0 32 ............................ GATAACGGGTTTTGATTGATATGGATTGCTGA 168128 28 100.0 32 ............................ ATTAGCGTTCTCTTTGACTTTCTCATATTCTT 168188 28 100.0 32 ............................ GCTGAGAGAATGAAAAGCAGAAGGGCTCATAT 168248 28 100.0 32 ............................ TTTAATCAGATTAGCGAGTCATCATTTTCAAC 168308 28 100.0 32 ............................ TGTAGAAAATGATGATTGTCCAATCTGTTCAA 168368 28 100.0 32 ............................ CGTAAAATATGGATTTACTTCTTATAAATCAT 168428 28 100.0 32 ............................ TTGCAAGCTCACAGTAGTTCACTCGATAGAGG 168488 28 100.0 32 ............................ GCAAACCTAGCTATTTAGTGGTCACTGTGGCG 168548 28 100.0 32 ............................ ATCCTCATTTTCATTGCATTATCCAAGTGAAT 168608 28 100.0 32 ............................ ATATCTATATAAATCAATACTATACATAACAA 168668 28 96.4 32 .............T.............. AATACAAAAATATTTTTGTATTGATTTGGTTT 168728 28 96.4 32 .............T.............. TTGCCAAATACAGTGGTAAAAGATAATAAGTT 168788 28 96.4 32 .............T.............. TACTAGAAAGTACTCAATTTAAAGAAGCTACG 168848 28 96.4 32 .............T.............. CCCATTAAATCTAACTCGATAACATCACGTCT 168908 28 96.4 32 .............T.............. TTGAATGGTTGCAGTGTCGCCTACCTTGTAGC 168968 28 96.4 32 .............T.............. TCATTAATTAGGCGAAAAAAGCCTACTGTAGT 169028 28 96.4 32 .............T.............. ATCAAGTATAATTATTTAATTTTTTTAAACAC 169088 28 96.4 33 .............T.............. ATCGCTACCTAAAGCTATAAATTCAGCTTCCGT 169149 28 96.4 32 .............T.............. ACTATAAGCATACGTTTATACCACCAATGGAT 169209 28 96.4 32 .............T.............. AACTGGTCAATGAGTGGTCTGATGCTACTCAT 169269 28 96.4 32 .............T.............. TTTAATCATTACTTTATCTGATTCGATTGTGA 169329 28 96.4 32 .............T.............. TCCTTTCTACCATGTGTAAGTGTGATGCGTTT 169389 28 96.4 32 .............T.............. TATTGGAGAATGATCCAAAATTATTCGAATAT 169449 28 96.4 32 .............T.............. ATTCCAAAATCTCTTGTTGAGAGATTGACTTC 169509 28 96.4 32 .............T.............. ACCCGTAAAGAGTTTTAAATATATAAATATCA 169569 28 96.4 32 .............T.............. ACTAGCCAACTATCACTTGTTCAAAACCTCTC 169629 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCTAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : ACCCGTAAAGAGTTTTAAATATATAAATATCAGTTCACTGCCGCATA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //