Array 1 1792863-1793096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073348.1 Porphyromonas gingivalis strain GMU202011 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1792863 36 100.0 30 .................................... ACACCCACTACTTATGAATTAACAGACTTT 1792929 36 100.0 30 .................................... AAGACGGAGTACAGGGACGTTGTCCGCATC 1792995 36 100.0 30 .................................... TGGAGGCAAGATGTTTTACTTCGACAAGAA 1793061 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2102718-2102463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073348.1 Porphyromonas gingivalis strain GMU202011 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 2102717 38 100.0 35 ...................................... TAAATCTGATACAACGCTTCATTAGCTTCATTAAT 2102644 38 100.0 35 ...................................... TCATTCCTATGTGACCATAGGTACTATTTGTTCCA 2102571 38 97.4 33 .....................................C CATAAAGGCTAGCCCACATCGTGTTTGGAAGAG 2102500 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 35 CTCACTATACATACACAGTCCGTAAGGCTATTAAGACA # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAATCACATATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTCTTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGTAATCTCATTGTATATCAATGAGATATAATCAACTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : CTGATTACCGAGGGTTAGAACGAATGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCGGGCTTCTTGTGCTCTATGGCATGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACCTCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCAAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTATCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGGACAGGCTCGTAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 2136164-2139209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073348.1 Porphyromonas gingivalis strain GMU202011 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2136164 30 96.7 35 A............................. CGTACTGTACCGCATCGGCCTCTCTTATCACATCG 2136229 30 96.7 37 G............................. ATCCATATTAAAGATTCCTCCGAAACAATCGCTGAAC 2136296 30 96.7 36 G............................. TCCTGTTTACCTGATCAATAAGTCCTTTCCTCTCTT 2136362 30 96.7 36 G............................. CCTCATCCCTTATCGACAACATCACAAAGAAAAGAA 2136428 30 100.0 36 .............................. TAGCACGGAAATCAGACATGATATGCACCTTGACAG 2136494 30 100.0 35 .............................. CCGTTCGGGCTTGGGGCAACGCTACCGTTCGGGCT 2136559 30 100.0 36 .............................. GTCCGCGCGTCCGAAACCGCTAACCGTGAACAGGCT 2136625 30 100.0 35 .............................. TTCGGGGCTTCTTTCTTAGAAATCTATGCTAGTAA 2136690 30 100.0 28 .............................. TAGGAAATGCAAAGAGTTGGATTCACTC Deletion [2136748] 2136748 30 100.0 37 .............................. CTCATGCTCGGGAACAGCATGGAGAAGCTCGCGGCTA 2136815 30 96.7 36 ............................T. TATAGCCGATGTTCCGAGTTCCCTTGCCGTTTCGCA 2136881 30 100.0 36 .............................. GAGACGGTTGCGACTTATCGACTTGATCTGCGCACA 2136947 30 100.0 36 .............................. TGGCTGCTATTTGCCAGTCCTGCGCCTTTGCAGGCG 2137013 30 100.0 36 .............................. TTCGACGGCGTAACCGCCTCGGTAGACCGCTCCGCC 2137079 30 100.0 36 .............................. CCTTAAACTATCGATCGAAATACCCCAACGAAGATT 2137145 30 100.0 35 .............................. TTAGGGGACGAAGATGATTTCTATAACGTTACAAA 2137210 30 100.0 35 .............................. TGCGGATGGGCACCTCTGCCAACAGGCGCGCCCAG 2137275 30 100.0 36 .............................. ACTTCCAGGAAAAATATAGCATCTTCACTATCTAGA 2137341 30 100.0 36 .............................. AACGCTGATACGGTCGTGCAGTTTTTAGAGCTATCT 2137407 30 100.0 36 .............................. AATCTATGATGATATAGAAGAAGACGATATATTGTT 2137473 30 100.0 36 .............................. TGTTCTGCAGTTACATACCGATGATATTGTTAACGA 2137539 30 100.0 35 .............................. AACCTCCGAGAAAGCATCCATAACCTCGTACACGG 2137604 30 100.0 35 .............................. ACCCGCACGACGTTGCAGCGGCACCTCCACCCATT 2137669 30 100.0 36 .............................. GCGATAAGGTGGCAGCCGCCGTCTTGTCCGCACCGG 2137735 30 100.0 36 .............................. ATCTTTGACCAATGCTTTTCGATCCATGATAGGGAC 2137801 30 100.0 36 .............................. AGAGCACCAGACTCTGCAGCCCCACCTGATAGGCTA 2137867 30 100.0 35 .............................. CTGAGGGGGACGGTGCGCCCCCTGACTGCGGAGTA 2137932 30 100.0 35 .............................. TGCGGCTATCTCGTTGTGCCCGATGATCCGCACGC 2137997 30 96.7 33 ...................A.......... GAGATAAGGAGACAGAAGCTTCTTGCTAGTAGA 2138060 30 93.3 35 C..................A.......... CAACAACCTAAAAAAAATAGCGGAGGCGGGCTGTA 2138125 30 96.7 36 ...................A.......... AGCCGCGCTCGAAACCTATCAGCTGCTCCTCCAGCA 2138191 30 96.7 34 ...................A.......... CCCTTCCCGAAGATCACACCCGCATCCTTATCCG 2138255 30 96.7 36 ...................A.......... TGTACTGCAGCTACATACAGACGATGTTTTCAATGA 2138321 30 96.7 36 ...................A.......... TAGGCTTTTTTCATAGACTTCTTATAGAAATCAATT 2138387 30 96.7 36 ...................A.......... CATCTCTTTCTAGTGGAAGAGAAATTAAAGTAACAA 2138453 30 96.7 36 ...................A.......... GCCCCACAAGGGGAGAAACAATAGAGGAAACTCTAG 2138519 30 96.7 37 ...................A.......... GAGGAGTATTCCTCGATAACTATATTCTCCTTGCGCA 2138586 30 96.7 36 ...................A.......... CGCAAACGAAACACCCGCCGAGGACGGCGAGGGAAA 2138652 30 96.7 37 ...................A.......... TTACATGCTTAAATGTTTTAATTCCTGTCCCGACCCC 2138719 30 96.7 37 ...................A.......... TTACATGCTTAAATGTTTTAATTCCTGTCCCGACCCC 2138786 30 96.7 36 ...................A.......... CGTAACCGCCTCTGTAGACCGCTCCACGCAGTCGTT 2138852 30 96.7 35 ...................A.......... TAGCTAATGCAGAAAAGACTGTTTCTTTATAGTTC 2138917 30 96.7 36 ...................A.......... TTATTATAGTAGCAAATAAATTGTGCTACTAACCAC 2138983 30 96.7 36 ...................A.......... CAATGTACTGCAGCTACATACAGATGATATTTTTAA 2139049 30 96.7 36 ...................A.......... TATTCCCCCATCGGAAGTTATTGAGAATATTCCAAC 2139115 30 96.7 35 ...................A.......... ACTGTTCGATCCATACTTAAAAAAGAATACCCCTG 2139180 30 96.7 0 ...................A.......... | ========== ====== ====== ====== ============================== ===================================== ================== 47 30 98.2 36 TTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTGGTCGGGAGATACCTCTTCCATCTTCAGCCCCAGGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTTCGGAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCACCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATACACGCTAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : TTTTTAATTCCTGTATGGTACAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //