Array 1 155314-156301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH114231.1 Bilophila sp. 4_1_30 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 155314 28 100.0 32 ............................ ACCACAAGAGCGCGGTACAGGCCAAGGCCAGC 155374 28 100.0 32 ............................ ACAAACACGTCCCCCGGTTCGTCCCCGTCGGA 155434 28 100.0 32 ............................ AATCAAGGGGAAGCCGGATGCCCGCCGGACCG 155494 28 100.0 32 ............................ ATCCGGTATGACAACGGCCTGTTCCGGCGGCA 155554 28 100.0 32 ............................ AGTCAGCGCGAGATGCAAGCCGAGAGTCTCCC 155614 28 100.0 32 ............................ GCTCCGTCGCAAGGTTTCCCCGAAGCGGACGG 155674 28 100.0 32 ............................ TCAAGCGCGAAGGCGAGAAGGCCCTCCGGGAT 155734 28 100.0 32 ............................ GTCTCGACGCTTCCGAAATACCGATCGGGATC 155794 28 100.0 32 ............................ TCACGATGGACTCCATCGGATGCGACGCGGAA 155854 28 100.0 32 ............................ CAACGCATCGCGCGCATCATGCACAGGCAATG 155914 28 100.0 32 ............................ AATCAGAAGCAGCGTCAGCATTGGAGGAGCCA 155974 28 100.0 32 ............................ GTAGCCATCCCGTGCTCACCGGGGAGCGCAAG 156034 28 100.0 32 ............................ TGTCGTCACGGGAAAGGAACGCATGACGAAAC 156094 28 100.0 32 ............................ TCGGCACGGCGTTGCACGCGGCGACGATGTAG 156154 28 100.0 32 ............................ TACTGGCATGGGCACTCGATTGGCACCTGCGA 156214 28 100.0 32 ............................ CGAGCGTGGATTGAGTTCAAGCGCGAAGGGGA 156274 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTATCCGCCGTGTAGGCGGCTTAGAAG # Left flank : CTTTGGGTTTTCAATAGCTCCGTTTTCATCCGCTTTCAGCGAGTGCAGAATCGACGTGTTCCGCGAGGATATGGAACCTCCTGTCGAGATCTCGCTTTGCGCCAGCAGACAGCCTGCGCTGGACATCATCGCTACACCGTTCGATCCAGCGGTCGACCTTCTTGACTTGTCTGCCAAGGTCGCCAAGCTGAGGAAGCGTTTCGGGCTTGAGAAGGGATAGCGCCACGGTAATCATGGACAGGGCCAGAACACAGCGGGTGTGCTGGATGGCCTCGTGCGGGTACGGGATTACGGGGTTGATGGGTCTTCGCATGTCGTTTCTCCAGAAAAAGGGGAAAGCCCCGGACATTAGTGAGGGGCTTCCTTTGGCTTCATAAAAAAGTTGTCTAAAAAAGAGATTGAGAATAAGGTAGTTACAAATAGAGAGGAAAAGTGAAGTTTCTGAAGTCTTTTCAGGTGTAACCTACTGAAAAGCAGAGATACTTTTGTAAAAGCCTCTA # Right flank : GTCATAAGTTTTTGGAGCAAGGTCAGTTCTTCGGACATGCTTCCTCCAAATGTACACGCGGAATCAAAATATCCGCGCTGAGTCCCAGAAGTTCACGTAGTATCGCGATTTCTGCCTTTGAGGGGCATCTCTTGCCTGTCAGCAGTTCAGAAGTCCGTCCCCGACTTTTCAGATACTTTGCCAGCTCAGACTGAGAAACGCCAAGATGTCCCATCGCAGTTCTGATGAGTCTTGCTGTGAACAAGGCGTCCTCGTTCATTTTCCTTCCTCCACGGCCTTGAGCGCTGCGTCCTTGTAAAAAGTCATCCAGTGTGTGTCTCGGCGTTTCGTTGTCGTATGTCCAAAAACTGGGCGTCTTGAAAAGCAGGAAAGCACCTCGCGCAAGCTGATTTGTGTTTCGTTCCATTTGAAAATCAAAGTTCCGCCCGGTTTCAAAACTCTCCAGCACTCGTCAAATCCCTTCGATAAGTCTTCGCTCCACGTTAGCCTATTAAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGTGTAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83572-84439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH114233.1 Bilophila sp. 4_1_30 supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83572 28 100.0 32 ............................ CTCTACCGCCAACAGAGGAACGGACCCCGATC 83632 28 100.0 32 ............................ TGCCCGGAAGAGCAGGCTATGGCGGCGGAGCT 83692 28 100.0 32 ............................ TCCAAAAGTTTTTGCCCGGCGGGATGCCGGAA 83752 28 100.0 32 ............................ AATCAGAGCGCCAGCAAACGCACCAACCGCAT 83812 28 100.0 32 ............................ ATCCCCAGGCCGTAACGCGAGGAGCCCACGGG 83872 28 100.0 32 ............................ ATTCGTCGAGCCAGTCTTTCCGGTACCAGATC 83932 28 100.0 32 ............................ ACGACCTCCAATGCTCCGGAAGGCAGGGCGCC 83992 28 100.0 32 ............................ CGTCAGCCATCGCCCGGGAGAAGTCGGTGTTC 84052 28 100.0 32 ............................ TGAATAAGGGTTTCGGCCCATTGCTCCATAAT 84112 28 100.0 32 ............................ CCAATCTGCCCCCGTGCGCTCGCCAGATCGCT 84172 28 100.0 32 ............................ ACGATTTCGCCTGTCACGGGGTCGACCTTGTG 84232 28 100.0 32 ............................ TGTGCAAGCGTTGCGGCGTGGGCATTCAAGAC 84292 28 100.0 32 ............................ GTGAGGAGCTTGTCGAAGTCATAGGGGACGTC 84352 28 100.0 32 ............................ GAAGCGGAAGCCCGCTACGCCGGGTGACGAAT 84412 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTATCCGCCGTGTAGGCGGCTTAGAAG # Left flank : CCCATTGCGTCCAGCGGGTGGCGTCGCCGGCCGCAGCCTGAACATCCCCGACGTGCCCGGCAAGGATATGGAACCGAGCATCCAGATCTCGCTTCGCGCCTGCGGAGAGCCTGCGCTTCTGCGTGTCGTCCGCACATCGGTCGATCCAGCGGTTGACCTTTTCGACCTGCTTTCCGAGGTCGCCAAGCTGCGCCAGCATTTTCGGCTTGAGGAAAGAAATCGCCACGGTGAGCATGGATAGGGCCAGAACACAGCGGGTGTGCTGGATGGCCTCGTGCGGGTACGGGATTACGGGATTGATGGGTCTTCGCATGTCGTTTCTCCAGAAAAAGGGGAAAGCCCCGGACATTAGTGAGGGGCTTCCTTTGGCTTCATAAAAAAGTTGTCTAAAAAAGAGATTAAGAATAAAGTAGTTACAAATAGAGAGGAAAAGCGAAGTTTCTGAAGTCTTTTCAGGTGTAACCTACTGAAAAGCAGAGATACTTTTGTAAAAGCCTCTA # Right flank : GTATCTGGTCGGACGCCTAGCCACTTCATCGGCATCACCCCCTTCCGGGGCCAGTTGCCCACAACACCTAAAGAAAGAAGGCGACCCACATCAAAGTGAGCCGCCTTTCGTTTGGGGCCATTCGTCGCCTTCGTATGGTGTTACATCCAGCACGTTGTAGGCGTACCTGTGCCGTCGGGATGGTTTGCCCCCTTCCGTGATGGGGATCACGCGCAGGTCGTAGTAGGGGTAGGAGGGGACGAACAGGATTTTATCAACCTTTGCCGGACTGGTGCCGTCGTGATCCCATCCGGAGACAATATCGCCTTCCTTGTAGGGGCAGGCGGCGACGGCGGCGTCACGTTTGGCGACTTCAAGGGCATTCTTCGCCTGTTGCACGGCGCGTTCGCACCTTCTGACCTCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGTGTAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 126117-125813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH114233.1 Bilophila sp. 4_1_30 supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================ ================== 126116 28 100.0 32 ............................ TCATCGCTCGAAGGGTCGAGGCGCACGGTGTC 126056 28 100.0 32 ............................ ATTCTCGATAAAATCAAAAGGCGACCGTTGCG 125996 28 100.0 128 ............................ GTGTAGGCGGCTATTATCACATGTGAATCTTCTGCTATTGACGAAGAAACTGAAGCTAGGTAGTCTCAAAAAACATAGTATTTTTATCCACCCAAAGGTGGTTTAGAATTTTTACAGATTGTTAGTAT 125840 27 82.1 0 ....A...............A.A.-..T | A [125838] ========== ====== ====== ====== ============================ ================================================================================================================================ ================== 4 28 95.5 64 GTTGTCCGCCGTGTAGGCGGTTTAGAAG # Left flank : GTAATCCGGCGATACCCTGCTGGGAAATGGCCTTCCGGCCCGAAACGTCCCCGTGCGCCCACTATCCAGAGTAACTTCATACGGCGGCGCCCATCGTTTTGGTAGCAGGCCACGGAAGTCTGCCGTGTAGCGCTTCGGGCCAAAGCGGCGCGCACTTCCTGCAACCCTTCGGTCGTCATGGGCGACATCCAGCAACGTTCCCCTGCGCGCAGGGCGTAGCTGTCCAGTATGGCGCGGCTGCGGCGGATGGCCCGTTTCTGACAAGCGGAAATGAAGATGACGTGCATAGAAGAAAAGGTATCGGTTTATACAGATGAGAGCAATATGACACGGGGAACAGCATCTCATCTTTTTTGTAGCTTCCTTTTGGCTTCAAAAAAAGTTGTTCGGAAAAACCTTTTGGAATAAAGTAGTTAAAAAGAGGCGATGCGAACGAAGCTATTGGAGGGTGCCAAGATGTAATCCTTTGAAAGATAAAGATATTGTCTCGTATCGCTCTA # Right flank : ATAAATTTATCCTTTTAAAGATTATTTGTTAATCAAAAAATGCCAATCAATATTTTTCCATAGAGCGTAAGGAGTTAAGAGTGTTCTTTTTCGTGCTCTTCCACCTCTTCATACAGCCGTTTCGTCTTCACGCCGAGGGCGTCCGCGATCTTCGCCAGCGTGTTGAGCTGACAACCGCCAATGGTGTCGTCTTGAGTGGCGCGGTGGATTGTACGCGTGGATAATTCTGTTTGACTAGATAAATCACGTATTGTAAAGCCTTTTTTATTCATTAACTCTCTGATATTACTTTTAAACATTGTGCACCTAAAATATTTTTTGTTGTAATTAAGTAATTTTTATTGACAGGATATGAGGTAATTAGTTACAACAGAACCATCGGAAAGGCAATAACAAAACAGCCCTCGGAAGTGTCGTTACCACTGCCGAGGGCCTAACCACAAAACCCTAGAGCATAGGAGTATTGTATGGTTAATCAGAAGATTACCGATTCTCGCGGT # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCGCCGTGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 134365-134812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH114233.1 Bilophila sp. 4_1_30 supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134365 28 100.0 32 ............................ TGCCCCGTAGAGATCAGCGGCTTATGCATCTC 134425 28 100.0 32 ............................ AAGCTGGAGCTTCGGCTCGTAGATGCCTTTTA 134485 28 100.0 32 ............................ TTGAGCGCGGGGGCGATGATGGCTTGGAATCC 134545 28 100.0 32 ............................ AAGCTGACAAAGAGCTAGAGAAAAAGATGGGG 134605 28 96.4 32 ...........G................ GTGTCCATGAGCGGTGAATTCGGTATCGTTGA 134665 28 100.0 32 ............................ AGCCGCGTGAGCGGAACCTCGCGCTTGAAGTT 134725 28 96.4 32 ....................C....... TCACATCCGGGCCAGCGCGAATCCCCGCAGCC 134785 28 92.9 0 ...........T...............A | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTATCCGCCGAGTAGGCGGTTTAGAAG # Left flank : ACGCTGGGCCAAACGTTTGTATGCGGATCTGGCGCGAGGACATGGATTTTCATTCGCTCGCGAAGAAGGCGCGCGGCGTTCAACCTCAAAAGCGGATGTCTGCAACGGTTTTCTGGATCATGGCAACTATATCGCGTATGGGTATGCCGCTGTGGCGCTTTGTGGCCTTGGGATCAGTTTTGCCATGCCTATCCTGCATGGGAAGACGCGAAGAGGCGCGTTGGTATTTGACCTCGCGGATGTGGTCAAGGATGGTTACGTCATGCCGCTGGCCTTCGAATGTGCCAAAGGAGGAGAGACACAAAAAGATTTCCGGCAACGCCTTATTGAGCACTGCCAAGAGGAAGAGGTTTTGGACTTCCTTTTTGACTTCATGAAAAACCTGTGTGTAAAAAACACATGATATAAACGTGTTACATCTAGCTCGCCAAAACGAAACTTTCAAAAGGATTTGGAATTCAATCTCCTGAAAAATAAGGATTTTGTTTTCAAAAACTCTA # Right flank : AACTTCCCGGCATCCCTCTTCCATTCGTAGGTCGTTTAGAAAAGGCCAGGAGGTTGCCCCCCCCGAAAGCCCCTTCCTCACGGTTGGGGCTTTTTCTCGTCTGCCCTTGACATAGACTCGTTTATATGGCGTGAGAGGGAAAGGAGGAATTAGACTATGGATGCAGCAAAAATAGCGGCACTGGCAGAAAGAGTACGGCAAGTACAGGGACAGTCGCTCAATGAAGCTATGACCAAAAATTCTCTGATCATGCCTTTCATAAATGCTCTAGGCTATGATGTATTCAATCCCTCTGAGGTTGCGGCAGAGTACACTGCCGATTTTGGGACAAAACGCGGAGAAAAAATAGATTTTGCACTTCTCAAAGAAGGGAATCCCGTAATCCTCATCGAATGTAAACCTCTTGGCGCCCCACTTGACACAGGAAAGTGTTCTCAACTCTTTCGATATTTTTCCACACAACCTGCCCGTATTGGTATTTTAACGGATGGGTGCCGCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGAGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGAGTAGGCGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //