Array 1 322398-323885 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAVP01000002.1 Streptococcus agalactiae strain NND003 out_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322398 36 100.0 30 .................................... ACATGCCACCTTATTGCATGGTGTATCGTT 322464 36 100.0 30 .................................... ATTTACAGGATTACCAAGAAGCACAACTTT 322530 36 100.0 30 .................................... TTATTTTAATATGTACTTAACAGATTATTC 322596 36 100.0 30 .................................... AACTTTATACAATTGTCTTGGAAACCTTTG 322662 36 100.0 30 .................................... CTTCGTAAAGCTATCCGTAGAGCTCGTAGA 322728 36 100.0 30 .................................... AGACATTTACCTATTACTTTAGAAAGTCAT 322794 36 100.0 30 .................................... TAGTGATTTCCGTATTATCGGAAAAGTTGT 322860 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 322926 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 322992 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 323058 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 323124 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 323190 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 323256 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 323322 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 323388 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 323454 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 323520 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 323586 36 100.0 30 .................................... ATTATCTTGCGCCTGTTGGATTTGATTGGT 323652 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 323718 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 323784 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 323850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //