Array 1 20105-20470 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCBQ01000050.1 Paracoccus sp. FO-3 scaffold50, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20105 36 100.0 30 .................................... AGGCGGTCGCCTACATCCGGACGCGCGTCA 20171 36 100.0 30 .................................... TTGGGACGCCCGGCCTTTTTGCCGTCAAAG 20237 36 100.0 30 .................................... GGCCTCGATGCGGGCGGCGTTGGATTTCGC 20303 36 100.0 30 .................................... TGGCCGGTCGATCCGACCACCTCGCGCTCG 20369 36 100.0 30 .................................... AGATACCGACTGCGTTCCAGCGATGAAGCA 20435 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 AGGTTAGCGCTTCAGAAACCGCAGGCCAACCGCAAC # Left flank : ACCGGCCGCCCCGATCTCCTGCTGTTCGACCCGCCCGGCGCGCTCGACTGGGCCGCGCTCGGCCGCGGCGAGGGGGACGGCGCGTGAAGAAGGACCCGTCATATCTGAGCGGATACAGGCTGATGTGGATTTTCGTGATGTTCGACCTGCCGGTGGGCAGCAAGAAGGAGATGCGGGACGCCACGAAGTTCCGAGAGTTTCTGCTGGATCAGGGTTTCGAGATGAGCCAGTTCTCGATCTACGCCCGGTTCTGCAACGGCAAGGACAGCTATGAGTCGCATCTGAAGCGGATCGAGGGTAACCTGCCGGAGAAAGGCGAGATCCATGTGCTCACGTTCACCGACAAGCAGTATGAGGGAATCGTCCGATTCTCCAGCCAGCGCCGCCGCAAGCCCCGCGAAAACCCGGATCAGTTGGCGCTGTTCTAGTTATGTCCAGGATTTGGCATCGCCTGGATGTGCCGACTCCTTGTTTTTAATCAACAAGTTGCCAACACATCC # Right flank : CTGATACCCGCTTTCAGTTTGCGAATGACGAATGTCCGCTTTGGCGAATACTGTTTTGCAGCACAACGGTACCACGACCGGCTAGTATTGGGCCGGAAGCGACGTCGTAACCCACAGCAAACTCTTTACAGAATGCCCGTTTTGTAAAGAGTGGATAGAGTCAGGACCAGAAATCGCAGGGCAAAATCAGATGACCCGATAGCGCACCGACCAGCATTTTGTTAAGAGTGACGGCAGCGCGCCGGTGGATGCGCATCGGCGCCGCCGAGATTACCTGACCCCCGATGAGGTCAAGCGCCTACTGGCTGCGGCCAGGTCCGGCCGGCACGGCGCGCGCGATCATCTCATGCTGTTGCTGATGTACCGGCACGGGCTGCGGGTCAGCGAGCTGATCGCCCTGCGGCGGACGGATCTCGATCTGGCCTCGGGCCGGCTCTGGGTGCAGCGGCTGAAGCATGGGCTGTCCACCAGCCAGCCGCTGGCGGGGGATGAGATTCGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTTAGCGCTTCAGAAACCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 15301-12402 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCBQ01000033.1 Paracoccus sp. FO-3 scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 15300 32 100.0 34 ................................ CCCTCCCCCGGAGGACTCGCGATGAGTGACGATC 15234 32 100.0 35 ................................ GGATGCGATGCTGCTGTGCGGCGGCATCGTCGCTC 15167 32 100.0 36 ................................ ACCGCCATGCCGCCGGGGGTCGTGACCTCGTCGAAC 15099 32 100.0 34 ................................ TACAAAGCCCTCTGCTGACAACCAAGCCTTGACA 15033 32 100.0 35 ................................ GAGCGCTTCGCCGCCACAGCAGCCGGCGATGGGAT 14966 32 100.0 34 ................................ TTGAGGCGCTCGGCGATGCGGTCGGCCTCGGGCC 14900 32 100.0 36 ................................ GAGGTGATCGGAACACTACCGACGCCGGAAAGCGTC 14832 32 100.0 33 ................................ GTGGGTTTCTCCACGATGGCATGCAGGACGCGC 14767 32 100.0 35 ................................ GGAAACTTGTCTGGGCGTCCAGCCCTCGGCCAAAA 14700 32 100.0 34 ................................ CCCCTGACTGTGACGATCACGCAGGGGGCCGCGC 14634 32 100.0 35 ................................ AAAATCATCAACATCATCCCCCATCGCTACCTCCC 14567 32 100.0 34 ................................ GCTGCCCATGACAAGCAGGTGCGGAGGCAACCAA 14501 32 100.0 34 ................................ GGCAACAAACTCGTTGACCACGCGAATAATAGTT 14435 32 100.0 36 ................................ ACCCTCACGCCGACGCAGGCCTTGGTTGACAAGATC 14367 32 100.0 36 ................................ TTGCCCTGGCGACAAAGGCCAATGGCTGACCTGCGC 14299 32 100.0 35 ................................ CAGCTAGAGGACAAGACGTGGCCCGAGTTGGCGAA 14232 32 100.0 36 ................................ CCGCCGCCGGTAAGGCCGTTGCCAGCGGTCAGCGTC 14164 32 100.0 35 ................................ CCGACCAGGAACGGTTCCGAGGCCGAGCGCAGCAC 14097 32 100.0 33 ................................ ATCAAATCGTAGCTGTCCACGCCGGCCAGGGTC 14032 32 100.0 34 ................................ AAGGAGCAATTGGCCGCTGAGGTCAAGCTAGCAA 13966 32 100.0 33 ................................ TCGGTATCGACATAGCCGATGGGCGCGCCCTTG 13901 32 100.0 38 ................................ CCGATCCACCGCGGTCAGCGCCAAGGCTGTATCCAGAC 13831 32 100.0 36 ................................ CGGTCGCAGCGCCGGATGCCTTTGCGCGCACCAGCG 13763 32 100.0 35 ................................ GATCCGGAGCGGCGCCGATCACCTCGCGCTTGCCG 13696 32 100.0 34 ................................ AGCCATTCCCGCACCATGTCGGCGCGCGCCACGT 13630 32 100.0 33 ................................ GGGGTCGATATAGGTGAAGTTTATGTCGAGGCC 13565 32 100.0 35 ................................ AGCAAGGCCAAGGGCGGCGCGCCCCGCGACCGCAA 13498 32 100.0 34 ................................ CCCATCGACAAAAGGTTCTCATCGTCCATCGCCC 13432 32 100.0 36 ................................ TGTCGGGGTGGGGGGCCGGGCGGACAGAGCGTGGCC 13364 32 100.0 34 ................................ GCGACGATTGGGATTACGGCAAGCGCAAGGGCGT 13298 32 100.0 36 ................................ ATCCAGAACGCGGTGGCGTGATGGCACCCCGTGGCA 13230 32 100.0 34 ................................ CCTGCGGTGCCGGGCGTCTCGACACCCTCGGCCG 13164 32 100.0 34 ................................ AGTCCGTGATCGCCGCCCATCCCGACGCCGTGGT 13098 32 96.9 34 ...................T............ GCAGCATGGGCAGCGAGTCAGGTCGTCACTCATC 13032 32 100.0 34 ................................ CGCATCCTGTCGATCAACCCGGATCCCGAGAACG 12966 32 100.0 34 ................................ ACGGGCGTCACCTCGGGCAGCGCGGCTTGGACGA 12900 32 100.0 34 ................................ ACCTGCCGCGATCCAGCCGCGACGCGTGGCTTGC 12834 32 100.0 35 ................................ AGTGGTTCTCCGACAATTGGCCGGATGCTGACCTC G [12815] 12766 32 100.0 34 ................................ ATGATCCTCACCGCTATGCGAACTGATCCATGCG 12700 32 100.0 35 ................................ GCGGCGCTGGTGCGCGTCCGGAAGGCATGCGGCCG 12633 32 100.0 35 ................................ CCGCAAGAGGATCGGCTCGTCCGTACCGACAGCAA 12566 32 100.0 34 ................................ CTTGCCCGCGCGTCATCAGCGACACGATGGACCC 12500 32 100.0 35 ................................ CAAGACGGCACCAGCGCCGCCCAATAGCGATTGGC 12433 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 44 32 99.9 35 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : GCCCTGGTTCTGGAGTTGAGATGCTTGTCCTGGTCACCTATGACGTGAATACGCTGGACACCGGCGGCAAGAAGCGTTTGCGTCAGGTTGCCCGAGCGTGCGAGGATTACGGCCAGCGGGTGCAATTGTCGGTCTTCGAGATCGAGGTGGACCCGGCGCAATGGACCCGGCTGAAGGCGCGCCTGGAAGGGATCATCCGCCCCGAGGTCGACAGCCTGCGCTATTACTACCTTGGTTCGAACTGGTCGCGCCGGGTCGAGCATGTCGGTGCAAAACCCGCGATGAATCTTAACGGCCCGCTGATTCTATAGTTTTCTTGTCCCTGCGAACATGAAGCGTGCCGACTTTTGCGCTGAGGTTCGCATCGGGGCGGCTTTTTTGAAATCGTTGGATTTTCTTTTCCTGTCCGTCATATCGGCTGACTTAGGACGAGCGCAACTGCCCCTTTCGCATTCGCAAGGAAGATTGCGGCATAACAACAGCGCGGTATAGGGAGGGTG # Right flank : ACCGGCAAGAACGTCACCTTCGAGCCCTGTTCAAAAGGGGGGCGCGGACGGCTGATCGGGCGCACGAAGGGCGGGCTGAACTCGAAGCTGTATGTGGTGGCGGACGCGAAGGGCCGTCCGATCCGGATATTCCTGTCGGCGGGGCAGACCTCCGACTACATTGGCGCGCGGGCGCTGCTGTCCTCGATCCCCTCGGCCGGGGCGTTGCTTGCAGACCGAGGTTATGATGCCGACTGGTTCCGCAACGCGCTGATCGAGATGGGGATTTCACCGTGTATCCCGTCCCGCATCGGTCGCAAAGCCTCGGTCCCGCACGACACCGAACTCTACCGCCTGAGCCACAGGATTGAGAACATGTTCGCACGCCTCAAGGACTGGCGCCGTATTGCAACCCGCTACGACCGATGCCCCATTCTGTTCCTCTCCGCCTGCGCCCTGGCTGCGACCATCATATATTGGTTGTAAGTCCTGACTCTAAGCGATCAATTTTCAGGAGACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //