Array 1 183792-185649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVI010000005.1 Erwinia amylovora strain Ea440 Ea_440_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183792 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183853 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 183914 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 183975 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184036 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184097 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184158 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184219 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184280 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184341 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184402 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184463 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184524 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184585 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184646 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 184707 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 184768 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 184829 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 184890 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 184951 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185012 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185073 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185134 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 185195 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185256 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185317 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185378 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185439 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185500 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185561 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185622 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 472-866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVI010000079.1 Erwinia amylovora strain Ea440 Ea_440_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 472 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 533 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 594 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 655 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 716 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 777 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 838 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNNG # Right flank : ATCGGAACGACTTAGATTAGCGTCCTTGCACATGTGTTCCCCGCGTATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVI010000014.1 Erwinia amylovora strain Ea440 Ea_440_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29996-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVI010000014.1 Erwinia amylovora strain Ea440 Ea_440_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29995 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 29934 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 29873 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29812 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29751 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29690 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29628 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29567 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29506 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29445 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //