Array 1 86289-85224 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEG01000114.1 Streptomyces sp. NRRL F-6492 P446contig2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86288 29 86.2 32 .........A...AG........A..... CACTACGTGCGTGGGGTCGAGATGGTGAACGA 86227 29 93.1 32 ....................A.....C.. CCGGCGGCCCCTGCGGGGTCGCCTTGCCCTGT 86166 29 89.7 32 .C..................T..A..... CCCACTGACCTCCGCTATGTGTTCGTTTTCGA 86105 29 89.7 32 ..A.C........A............... GCCACCGGATCGTTGTGTTCGGATGCCTTCGC 86044 29 86.2 32 ...........A...AT....A....... CATTTGACGCCGCTGCGATCGTCCTCCGCTTC 85983 29 75.9 32 .....T....T..A.....GA.CA..... AGGTCGTCGCGGCGGAGGTCTACGACTCCGTG 85922 29 86.2 31 ......G..AT......A........... CTCGACGGCCGCTGGAGGGGGCCAGGATCAA 85862 29 96.6 32 ........T.................... CTCACCAAGCGCGGGTTCGGACCGTGGGCGCG 85801 29 100.0 32 ............................. GCGACCGGAGCCGGCCGCCCGCCCGAATACTG 85740 29 100.0 32 ............................. CCGCCGGCGCCAAGGTCACCGTCGACGAGCAG 85679 29 100.0 32 ............................. AACCCCCATGGCGCCGTCGGCGTCCACAACGT 85618 29 96.6 32 .................A........... CGGCCCTGGCCGGCTACCAGCCCCACCAGGAC 85557 29 96.6 32 .......T..................... ACCGCGGTACGGTCCGCCTCACCCTGACCGCC 85496 29 100.0 32 ............................. CAGACCTTGCCCACGCCCATGAAGAGGAGGAA 85435 29 96.6 32 ........T.................... GGGCGGCTGTCGTCCGGGTCGTCGTCGAGCCG 85374 29 93.1 32 ..A.......................C.. TACAGCGGGGGCTTGGCGGTCCACGCCGTTCC 85313 29 93.1 32 ..................A.......C.. TTGTCCCGCAGCTCGCGGAGCACCTCGGCCTT 85252 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 93.1 32 GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : CCCGCATCGTCAACGACATCCAGACCCTCCTCGCACCCGGCCACCCCATCGACATCCCCGACCCCGAAGAACAACTCGTGGACCTCTGGGACCCGATCACAGGAACCGTCCCCGGCGGCACCAACCACACCCCCAGCCCCTGACCGCCCCCGCAGGAGGACCCCACCACCATGCCCTCGATGATCGTCATCTCCGCCACCGCCGTACCCGACCACCTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCGAGCTGTACATCGGCACCGTCTCCGCCCGCGTCCGTGACGAACTCTGGACCTCCGTCACCGCCTGCACCGCCGACGGCGCCGCCGTCCTTGCCTACCCTGCCGCCAACGAACAAGGCTTCACCCTCCGGACCGTCGGCAACCGACGCCGCGTCCCCATCGACTTCGACGGCCTCACGCTTATGACCTTCAGGAAACAGAGCCAAGAAATGGCAAACTCCTTCTAGAATCGCAGGTCAGGAAGG # Right flank : GGTCTAAGAAGCCGTTGCTTTTCCGGATCTCATATGTGTGTTTCCGCAGGTCAGGTGTGATGTGCGCGTTGTCGAGGCAGGCTGGGGCCGTCTGATTCGTCGTGGGTGATGTGAGGTGGCGGATGCCGTCGATGCGGGCTGTGATGGAGAGCCGTGAGAGGGCCGCGCTGGCGCGAGTGGAGGAACTGCATGCCGAATTCGAGCGGGTGCGGGCGGCTCTCGCCGACGCAGAAAAGGTGCTGAACCGCCGGGTGATCGGCCTGGAGGAGTATCTCGAGACGCTGACCCAACTGGGAGGTCCCGAGCCCGCCGAGGCTTCAGGGCCGTCCGAGCCTGAGCCTGTTCGTGAGCCGGTGGTGGACGACGCGGCGGCCACGTCGACAGCCAGGGCTCGGCGGGTGGTGGCCCGCAGGAAGGACGGGGTCGAGGTCGACATTCTCGGCCCGGATTACCGACGGATCATGGCCATGCTCGAAAAGACGGGCGGTGACGGATTGTCG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96151-98194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEG01000114.1 Streptomyces sp. NRRL F-6492 P446contig2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96151 29 100.0 32 ............................. CTCAACAGGCATGGCGGTACCCCGGTACGTGT 96212 29 100.0 32 ............................. CCCCCGGGCCTAACGGTCCGGGGGCTTCTGTC 96273 29 100.0 32 ............................. TGGCTGAGGACACCGATGCCGAAAGCGACGAG 96334 29 100.0 32 ............................. CGTCGTTGCGGTCGATGCGCATGACGACAGCT 96395 29 100.0 32 ............................. AACCACCTCGACCCCGACCCGCGGCTCGCGGC 96456 29 100.0 32 ............................. CGGAATGGCCCCTACAGATTGTTCGAAATCAG 96517 29 96.6 32 ............................T CTCCCCGCCACATACGAAACGGCTCCTCCCTC 96578 29 100.0 32 ............................. GCGCCGCACCTCCTGGTGCGGCGCCTTCTTCG 96639 29 100.0 33 ............................. TTGCGGACGAGGGCCTCCAGTTCAGGGCCGGTG 96701 29 100.0 32 ............................. CCGGCGCAGCTCAGATCCCAGCCGCCGACGTC 96762 29 100.0 32 ............................. TTGGAACAGCTCTCCAACAAGCGCGTAGGCAT 96823 29 100.0 32 ............................. CACGCATTCAAGGTCCTCTCCCCTACCGCCTC 96884 29 100.0 32 ............................. CGGACACCCCCCTGAGCAGCCGAAACGCTCGT 96945 29 100.0 32 ............................. TCGGTCGTCTGGGTGTTCATCCTGCTGCCTTC 97006 29 96.6 33 ............................T GCCGGCCGGTCGTCACGGACACTCCGGTCTGCC 97068 29 96.6 32 ............................C CACATAGGCGGACTTGAAGGCGGAGGCGCGCA 97129 29 100.0 32 ............................. CCCGATGACCAACACCGAGCCCGACCAGACGC 97190 29 100.0 32 ............................. TACGGCAAAGGACTGCTCGACCAGGGCCCGTC 97251 29 100.0 32 ............................. TGGAGCCAGTCCGGAGGCGGCACCTCGACCTT 97312 29 100.0 32 ............................. TCCGTGGCCGGCGGACGAGTCTCCGCGACAGG 97373 29 100.0 32 ............................. CTGCCGCATCTCCGGCTGCGGATCGGCGTACC 97434 29 100.0 32 ............................. ATGCAGTGGCCGACGAACGACGACACCGCGAA 97495 29 100.0 32 ............................. CCCGGCGTTCAGTCCAAGGCGGTCGGCGGGCA 97556 29 100.0 32 ............................. TGGACCAGGGCGCTGCGCCAGGGCTGGGACAG 97617 29 100.0 32 ............................. GTGCCGCTCGTGCCCTGGTCGTCCCGGGCGGC 97678 29 100.0 32 ............................. GGGTTCGGCGTGGACATCCAGCCGTACACCAC 97739 29 96.6 32 ...T......................... ACGCGCTCCAGCAGGTCCGGCGCTGGCTTCCA 97800 29 96.6 32 ...T......................... TGGACCAGGGCGCTGCGCCAGGGCTGGGACAG 97861 29 100.0 32 ............................. ATCAACGAGGTGCTGACCGAGGTCATGGGCCA 97922 29 96.6 32 ..........A.................. ATCCCGGAGAGGTGCTTGCGGGCGAGCGGGTC 97983 29 100.0 32 ............................. GTAGCGGCCTCCTCGGACGCCGGGCCAGAAAA 98044 29 100.0 32 ............................. CGCCAGGCGGACCCGGGCCGGGCGCCCGCCCT 98105 29 100.0 32 ............................. CTCCAGGCCTCAACCGAGACTCGTCCGGACAC 98166 29 89.7 0 .....T..T.............C...... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.1 32 GTGCTCTCCGCGCAGGCGGAGGTGGGTCG # Left flank : CTGAGCCTGAAACGGCGGCGTGATCTTCCCCAGATCGTGCAACCCGGCCCAGAACGACAGGACCTGACGTGCCTCCGACTCGGTCAGTTGCAAGGCGTCCGCGATACGCGCACGGACCCGGGAACCCAGCACCACATCCCACAACACCCCGAACACAGCCGCTGCGTCCAGCAGATGGCAGATGACCGGATAAGGGCGCTCCAAGCCACGTTCCTTCGCCCACAGCCGGCAGTCGGGGCCAGCGGCACACACGGGGACGACATCAGGTTCTGTCATGGCATCACAGATAGCAGGCGCCACTGACAACGCACCGATCGACAAATCCTCGTGGTGCAGCGACCGCCTCGGGACACTGCAACAGGGCGTATCACTGTGGCTGTTGTCCCGTAGGCTTCACCGTTGTGACCAAGCTCGCGGAGGTAGATGTGCTGGCGTTTCTCTCGCGAGAAAAGTGTGGTCAAGAAACGGTAAAGCCCTCCTAGAATGCCTGCTCAGGAAGG # Right flank : GGCATTGGACTGTGCCCGAGGTCAGTAAATCGTCTTGTGGACTTCGGTGGCGATGCGGAGGGCAAGGCCGGGCTTAGAAGTCGTCTCACTTGGTGCGGACCTCACATGCCGCGCTCTGGGCCGTGCGTCTGGCGGGTGCGTTCTCCCGGCCCTGTGGGCAGGTACTCCAGCTGGACGGGGCCGGGGTAGAAGGTCGCGCTGTCCCAGCCGGCCATCTCCTCACCGATCAGATAGCGATACAGCCACTCGGCGAAGGTCATGGGGTGGCCGGCCCATTCCCCCTCTGACCCCTGCACCACCACGCCGTCGGGAAATCCGTGGACTTCTGGAGCGAGGAAGATGGCGGCTCCCTGGTCCGTGCCGGCGAGTGGGATGAGGCCGTCGGGGGTGCCGAAGGCGATCTGCGGACAGTTGCAGATCACACGGGGATCCTCGTCGGGAGCCAGGTCATAGGACTCCCACAGGCTCTCCGCCCAGGCTCTCGACATCGACCGGATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //