Array 1 284575-287003 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGS01000002.1 Moraxella catarrhalis strain COPD_M106 NODE_2_length_348405_cov_18.3053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 284575 28 100.0 33 ............................ CATGAGCCTTTAGATGATGATGATGACTTTGTC 284636 28 100.0 13 ............................ GATCAGATTTATC Deletion [284677] 284677 27 82.1 0 .......................CACG- - Deletion [284703] 284697 25 89.3 32 ---......................... AAATCATCTTCTAAATAAAGATCAGATTTATC 284757 28 100.0 32 ............................ TGTGAGTTGACAAATCTTTGCCAATTTTATTA 284817 28 100.0 32 ............................ ATGATTATAAATCACTATCGCAGGTTTATTAT 284877 28 100.0 32 ............................ ACACAAATACTTTTGTAGTGAGTGGTGCTTTG 284937 28 100.0 33 ............................ GAAAAAACTCTTTAATCAAGCGTTTTTTGGCGG 284998 28 100.0 32 ............................ TAAAAAAGGCGGTATTTTATGCTCGTCGTGCT 285058 28 100.0 32 ............................ CAAACAAAACGGTAACAACTCGGTAATCTCAA 285118 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 285178 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 285238 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 285298 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 285358 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 285418 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 285478 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 285538 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 285599 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 285659 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 285719 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 285779 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 285839 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 285899 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 285959 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 286019 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 286079 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 286139 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 286199 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 286254 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 286314 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 286374 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 286434 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 286496 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 286556 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 286616 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 286676 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 286736 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 286796 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 286856 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 286916 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 286976 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 42 28 99.2 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //