Array 1 43236-44459 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEI01000003.1 Ligilactobacillus salivarius strain JCM 1042 JCM1042_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43236 36 100.0 30 .................................... GCAACCAAGCAAATTTATTGCCAAAAATTA 43302 36 100.0 30 .................................... GAATTGATGGACAAAGAGACCAATAGAGGA 43368 36 100.0 30 .................................... ACTTTGCCAAAATCAAGAAAGATACAGGTA 43434 36 100.0 30 .................................... CATCGAGAAATCATAACTGCCTTGACGATA 43500 36 100.0 30 .................................... AATTGGTGTATCCTGAAATCTACTTTTTGA 43566 36 100.0 30 .................................... ACAACAAATGTTAGCAGTGGCTGACTTACA 43632 36 100.0 30 .................................... TTATAACAAGAAAGATTTTTATCAAAATAA 43698 36 100.0 30 .................................... TTCAGATATTAGAAAGAAATATCAAGATGA 43764 36 100.0 30 .................................... TGGTCAAGTCGTCAATCTCACTAGGTGTTA 43830 36 100.0 30 .................................... AACCTAAGACACATACTCCAGCAGTTGATG 43896 36 100.0 30 .................................... TGAGGCTTATATGTCACAACTCAATGCTTT 43962 36 100.0 30 .................................... AATCTTATCGTATAATTACTAACATACGAA 44028 36 100.0 30 .................................... TTTTTTGATAGTCTGTAAACTCTAGCTCTT 44094 36 100.0 30 .................................... CGCAATTTTCGATATTTTACCAATCAACCC 44160 36 100.0 30 .................................... ACAACACTGGATATTTTAAGTTGAGAGAAT 44226 36 100.0 30 .................................... TTTAGTGGTAACTCTAGTGGCGTAGCTATT 44292 36 100.0 30 .................................... TAAAGACGCTGGATACACACCAATGGTTTA 44358 36 100.0 30 .................................... ACAACTGGAGTTTGAGTACGTTTAGCTTGT 44424 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGCAGATTATGATAATGATTTAATAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAGTGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACT # Right flank : TAAAATACAAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGAGTAAACACACTATAGTGTGACATTACAGATAAAAAGGCCCTCAAAATCACATTTTCCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //