Array 1 667510-669721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061024.1 Streptococcus thermophilus strain 13498 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 667510 36 100.0 30 .................................... CTAGGCAATCTTGAATATAACGATATCAAG 667576 36 100.0 30 .................................... GGAAAGGTAGTGATGGACGAGATGGTATTC 667642 36 100.0 30 .................................... ATAATCACGATGACATCATAGGAGGGATTG 667708 36 100.0 30 .................................... TCCTTTTTTGAAACGGTAAACTCAAACGTA 667774 36 100.0 30 .................................... GATATCTATGTGGAACTTATAACCGCTAAG 667840 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 667905 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 667971 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 668037 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 668103 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 668169 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 668235 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 668301 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 668367 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 668433 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 668499 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 668565 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 668631 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 668697 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 668763 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 668829 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 668895 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 668960 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 669026 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 669091 36 100.0 29 .................................... TAATTTCAATATCTTTGAACACTATCAGG 669156 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 669222 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 669289 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 669355 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 669422 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 669488 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 669554 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 669620 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 669686 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 908755-909881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061024.1 Streptococcus thermophilus strain 13498 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 908755 36 100.0 36 .................................... GCTATCTGGATTTTCTTCCTTGAATTTTTCAAACCA 908827 36 100.0 39 .................................... ACTTACATATTCCAAAATTAGCTCTTTGATGTCATTATT 908902 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 908973 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 909046 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 909119 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 909194 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 909268 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 909340 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 909412 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 909482 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 909558 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 909629 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 909702 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 909776 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 909846 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 97.9 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1385779-1384423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061024.1 Streptococcus thermophilus strain 13498 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1385778 36 100.0 31 .................................... CAAATTTGTCAAAATCAAAGTTAATTTTTCC 1385711 36 100.0 30 .................................... GATTCAGTGGATGCGTATTACCGAGGAGGT 1385645 36 100.0 30 .................................... CCATCTTAACGAGAACATTGGAGAGTTAAA 1385579 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 1385513 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 1385447 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 1385381 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 1385315 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 1385249 36 100.0 29 .................................... ATGGCCTATGCTTAATAAAATATCTTAAA 1385184 36 100.0 30 .................................... GCTATACCCTAATATAGCTGAACACGTCAA 1385118 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCACAAAGT 1385052 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 1384986 36 100.0 30 .................................... TCATAGAGTGGAAAACTAGAAACAGATTCA 1384920 36 100.0 30 .................................... AAGTCGTGTCAGAAAGATTGCTGACCGTTT 1384854 36 100.0 30 .................................... AGATAAATTGCCAGACATGAGACGTTATTT 1384788 36 100.0 30 .................................... CCTTAAGCGTGCCCGTGGTTTCACAGCTTT 1384722 36 100.0 30 .................................... TGATTTTATATACCGAAAAGACTACGTCTT 1384656 36 100.0 30 .................................... CACTTTCTTTATCACGACCTAGATTATCTT 1384590 36 100.0 30 .................................... TCAAAGCCTTGTCTGATCACACGAAAAAGA 1384524 36 100.0 30 .................................... CCATTTCTATGGAGTTTACGGTGACGTCGT 1384458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : ATTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //