Array 1 114519-105662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037984.1 Rathayibacter toxicus strain SA08-08 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 114518 29 96.6 36 ............................G AGGGCGCGTTCGCCGGTCAGGCGTGGGAGGCTGTCA 114453 29 96.6 33 ............................G CCCCACCAATAATACCGGCTATGCCACCAAAAA 114391 29 96.6 33 ............................A GGGTTTTGCTTCCTTTTATTGATTTTGCTTTTA 114329 29 96.6 32 ............................T GTGATGAGGTGCGAACCCTCCTAGAGGCTATA 114268 29 100.0 32 ............................. CGGTCGGGTCGTTAACCCCGCGGCCCGGCCGG 114207 29 100.0 33 ............................. GCTAGATTGCGTGATAGGATCACCTCATGCCCA 114145 29 100.0 33 ............................. CGCATGGGATTCTTTTGTTAGGCTATATGAGAA 114083 29 100.0 32 ............................. ATTACCACGCTGACACCCCATGTCAAGAGGTT 114022 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 113961 29 100.0 32 ............................. AAGCGTGCCATGCTTGTCAACAACAAGACCCC 113900 29 96.6 32 ............................G TGGGGTCACGAGCTCACATCCGAAAACACGAG 113839 29 96.6 32 ............................T AGCGGCCCGAGTACGGTTGTCCATACCGCGGA 113778 29 100.0 32 ............................. CAGAAGATGGTGTTATCTACATCCCACTAGAG 113717 29 96.6 32 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACAT 113656 29 96.6 32 ............................A GCATCCGCGGGAGGACGAGACAGACCGTTACT 113595 29 100.0 32 ............................. CTTACCCGCGATTCCGCTGGCCCTGCCGGTAT 113534 29 100.0 32 ............................. ACGGATAGCCTCCTGCCACGGCTTCACCCTTT 113473 29 96.6 32 ............................T TCATTACTGCCGGTGGTTCGGATCCAGATCCG 113412 29 100.0 32 ............................. GCTTTAGGGGCCGCGAAAGCGCCAATAAACGC 113351 29 100.0 32 ............................. GCCATCGCTGCGGGTATACAGTGGCTTAATGG 113290 29 100.0 32 ............................. ATTTACTGGCAATCTCCGCGACATCGGGCTGG 113229 29 100.0 33 ............................. CAACCCCGACCATCGATAACCTCGCCGTCAGGA 113167 29 96.6 32 ............................A TTCTTCTTCGCGGCCAGGTTGTCCCCGCGGGA 113106 29 96.6 33 ............................G CTTCGCAATATGACAAAGGCCAGCTAGCTAAGG 113044 29 100.0 32 ............................. GATGAAATAGCATCCCAGTTATTGGCAGTTAT 112983 29 96.6 33 ............................T AACTATGCCTATATGGTCAGCGATTACCTGCAA 112921 29 100.0 32 ............................. TGAGAAGCTTGCTGGCCGCAAACGCCTGATTG 112860 29 96.6 33 ............................T GCTATTAACGCGCAGTCTAGGAAAACCCACTGC 112798 29 100.0 33 ............................. TTTCGCCCCAGGGGATCATCGGCAATCCTCGGA 112736 29 100.0 32 ............................. CTGCGACGACGCAGGGTAAGCAGAAAGCGTAT 112675 29 96.6 33 ............................T CTGCGGACAGGATGTCTTATTTTGAGTGGTCTA 112613 29 96.6 32 ............................A GGATTCTTCCGCGACGGCTTATATGATTTTTA 112552 29 96.6 32 ............................T ATCATCGAAAAAGAAAACAATACACCCGAATA 112491 29 100.0 32 ............................. TTCTGAGGTCCCCGGTGATTCGAAAAGCGTGC 112430 29 96.6 33 ............................T TGATGTTTGCGCCGCGAGATTGTTGGCGAAACC 112368 29 96.6 32 ............................T GGGGCGACCGCATTAAACGGAAATACCAACAT 112307 29 96.6 33 ............................T AGCGTGGCTTCTCTTATCCGTCAGCATCAAGAG 112245 29 100.0 33 ............................. AGTCGCAGGATACTCCGTCGCTGGCCCCAACGG 112183 29 96.6 32 ............................G CGGGTTAAACCGTGGCAGGAGGCTATCCGTGT 112122 29 100.0 32 ............................. GAAAGCGGCGCCTATACGCTTAAGTGCATCGA 112061 29 96.6 34 ............................T GAGTTGCTGGCCCCTGATGGTTCTCCGCTGCTTA 111998 29 100.0 33 ............................. TGTCCAGCAACAGCGTCGCCGACTACTGTCTGA 111936 29 100.0 32 ............................. CATCAGGGGCCAACAACTCGTTCTCCATAGGA 111875 29 96.6 33 ............................G TACCAGTAATACGGTACCCGGCGAAAGGGTTAA 111813 29 100.0 32 ............................. GACCTCCCGCGCTTCTTCAGGCCAACCTTTTT 111752 29 96.6 32 ............................G TAATCTCGCGCGGCGGAGTCCAGCCAGTCCAC 111691 29 96.6 32 ............................T GCGTTTTTGTTCGAGGATGTGAGCGCGCCAGA 111630 29 100.0 32 ............................. CACGGGGACGGTGATGCGACGCGCACGAAGCA 111569 29 96.6 32 ............................G TTGTATCGCTGCGTTAATGATCAGCGGGAGCG 111508 29 100.0 32 ............................. TTTATATTTAGACATTATTGTGGCCCTTAATC 111447 29 96.6 32 ............................A TACGGGGAAACACGCACGTTTACAGCCACACA 111386 29 100.0 32 ............................. AGAATTCAATGATCCGGTAAAGAAGTTGGCGA 111325 29 96.6 33 ............................T GATTTCGGCGGCGGCCGTATCGTCATTGATGGC 111263 29 96.6 32 ............................A TGGTTCCTAGTGATGGTGTTGCGCCCTTCTCG 111202 29 100.0 32 ............................. ATATGTGACGCCTAAAATTGGTGTTTTACTGG 111141 29 96.6 32 ............................A TGAAGCGGGGCAGCCTCGCCCCTACCGGCAGT 111080 29 96.6 32 ............................A CTCAGTATTAAAGTCTTGTATTCACTGATCAT 111019 29 96.6 32 ............................T CAGCATCCCCAGCTTTATCCCTATAGATCTCC 110958 29 100.0 32 ............................. ACATCCGGTCGCGATTCAAATAGGTGATTTGG 110897 29 100.0 32 ............................. CGTCTCGTCACAACCCGCCGCAATCACCGACG 110836 29 100.0 32 ............................. CGGGACCTCTCTGCGTCGCGTTAGAGTAAACG 110775 29 96.6 32 ............................G CCAGGATGGAGCGTCGTCCCGCTGACCCGATC 110714 29 100.0 32 ............................. GCCACGACCATATCGGCTTCCGATCCGGCACC 110653 29 96.6 33 ............................A AAGCTTCAGAAGGCGCTGGAATTTGGCGATAGA 110591 29 96.6 32 ............................T AACCTTAAAAATGGCTGTGCAGAACATGTGCA 110530 29 96.6 32 ............................G TGGTGGAGAGGTATGAGGGCGGCGCGACTCTC 110469 29 100.0 32 ............................. ATCATTACCGCGGTTATTACCCTGATAATCAC 110408 29 100.0 32 ............................. ATTGCCGCACTAGTCACCAATAAAGAACCTAT 110347 29 96.6 32 ............................G CCGACACCGACGGCTGCAATCTGCGCGATATA 110286 29 100.0 32 ............................. ACTTGGGTTTCCGAGTATGGCGACTGGGCATC 110225 29 96.6 34 ............................T AAATAACCTTCGGCTCCCCGGCAGACACATCGCG 110162 29 96.6 32 ............................A TACGGGTGTGGGGGGCATGTATATAGTAGGGG 110101 29 96.6 32 ............................T GTGGCTGGGTTGGTACTGCTGGGCGGCGCGAG 110040 29 96.6 33 ............................G TTTTTTATCAGTAGCAAAAGCGGCGATCTGTGG 109978 29 96.6 32 ............................G CCGCGGATGACCCGACGCGAGGATGCGTCCGC 109917 29 96.6 32 ............................G ATATGGAGTGTCGGCCACTTCGCCGGGGAATT 109856 29 96.6 33 ............................T TAAACGGGCCGTTAGAGGTGAATGGGGCGACCG 109794 29 96.6 32 ............................T ACGTAGACGGCTGGCGCGACTCATATGTCATA 109733 29 100.0 32 ............................. ATGCTGTACTGTCGTAAGGCTTTTCAGGGCCC 109672 29 100.0 33 ............................. GACTCGAACATTCCATAACGTGTCCGAGTCTTA 109610 29 100.0 32 ............................. ATGCTGCCGCGCCTCATCGAGATGGGCATACA 109549 29 100.0 32 ............................. GCGACGCAAAGAGGTCCCGGCTATATTAAAAG 109488 29 96.6 32 ............................G CGGCCCTATCGTTGATGACTGGCGTCCTGCAA 109427 29 96.6 32 ............................A GAAAATGTCGCCCCGCCGACCTTCAAAAGCGC 109366 29 100.0 32 ............................. GCGCACACTCCCACACGAGTATTGTGAGATCA 109305 29 96.6 33 ............................G TGTTTGCCGCATCGAAGGGGTGGCCGTTCTTGC 109243 29 100.0 32 ............................. CCTATCCGCCACCTTATTCTCGGCATCAGAAT 109182 29 100.0 32 ............................. ATGTCGTCCTCTTCCTGTAAAAATGTTGTGCC 109121 29 96.6 32 ............................T ACGGCGACGCTTCTTCGCAGGCCGCTGCTGCT 109060 29 96.6 32 ............................T CGCCACCACATCAGTATTTTGATCGAAAATCT 108999 29 100.0 33 ............................. TTTTGAGCTAAAATTTAATGACAGTTTTTTTGA 108937 29 100.0 32 ............................. GCTTCGAGACGGACGGTATCGTCCCGCGCCGA 108876 29 93.1 32 .....................G......T CATCCAGCTGTGTATCTGTCCACTGTCTCCAC 108815 29 96.6 32 ............................T AGACACCCTAGTCTTAGATAAACACGTCGACC 108754 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108693 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108632 29 96.6 32 ............................T ATTATCTTCCGGTTCAACAATAGCAAAACTTA 108571 29 100.0 32 ............................. TCGTACTCTGGCATCAGAAGGGAATCTCACTC 108510 29 96.6 32 ............................G TCCATCCCGCGGTGCGGATTGGGGCGGCCTTC 108449 29 96.6 32 ............................T GTGACGCGTGCTGTACCGGAAACGATTTCGGG 108388 29 96.6 32 ............................G CCCAGATGCCTACAGATATTGGGGCTGCATAC 108327 29 96.6 32 ............................T TTTTCGGTTCAGGATTTGTGGGAGAAGATGGG 108266 29 100.0 32 ............................. TTCAGCGGCAATCTCCGCGATATCGGTCTGGA 108205 29 96.6 33 ............................A CGAAGTGACGATAGACAGGATGGCCGCCGTGGT 108143 29 96.6 32 ............................T AACAGCAGCCCATATCAACCTAAGCGGCCCCA 108082 29 96.6 32 ............................G TAACCTGGCCTCCGCCCACGGAGGCACTCCTC 108021 29 96.6 32 ............................G TATTCTCGCCTGAACTCTTATGTTATCCAGTC 107960 29 96.6 32 ............................G TATCTCCGGAGATCACATCGCGTGCAGCCTCC 107899 29 96.6 32 ............................T GGGCCATCGCCGCTAAATATCGGCGACATTGT 107838 29 96.6 32 ............................G TATCCTCCGCGAATTTCTTACGCGCAGCCCTA 107777 29 96.6 32 ............................T CGGCGCTTGCCGCTCGGCTCAGCGACGTTACC 107716 29 96.6 33 ............................T CTGTTGACGTGCGGGAGTCGCGGATAGGTTTTA 107654 29 96.6 32 ............................T ATTAGGCCCCAAGTCGCCCGAAGACTCCGAGG 107593 29 96.6 32 ............................T TTTTTGGGGTATGACGCGGCCATTAGTAGCCT 107532 29 100.0 32 ............................. TTCAGCGGCAATCTGCGCGATATCGGTCTGGA 107471 29 96.6 33 ............................G CATCCTCCGACATTCCGGGTGCACCATTAATTA 107409 29 100.0 32 ............................. ACCGCCAACAACAAGCGGGACAACAGTACGAA 107348 29 96.6 32 ............................A ACGTACACCCGCGCGCCACCAAAGCCGTTCCA 107287 29 96.6 32 ............................G CGTTCGATGCCGTATTTGCGTGGGTCGTGTGC 107226 29 96.6 32 ............................T TGTCTCCCGTTAAGGACGTGGTTCCCGTGAAT 107165 29 100.0 32 ............................. GCAATTGATGCGCGAGTAGCCGCGATGGAGAC 107104 29 96.6 32 ............................G TACCAAATCGATGTAAAAACGACCTCGGGAAG 107043 29 96.6 32 ............................T GGTTTCCGCGCCCGACAGCCCTACGTTGATGT 106982 29 96.6 32 ............................G TCTATCTAAAGCGTCTTTTCTTATGTTCAATA 106921 29 96.6 33 ............................G CATTCTGCATATCCACATTAGCCTGATCACTTA 106859 29 96.6 33 ............................G ATCAGCCCGCACCCTATCCGCGACCTTATTCTC 106797 29 96.6 33 ............................G GAGCTTCTCCTACCCGGGGTCGCGGAAGCCCTC 106735 29 100.0 32 ............................. CGTCGGCCATGGTACCCCTGACTCGTCGGCAT 106674 29 96.6 32 ............................T GCGATTAATGCGCAATCCAGGAAAACCCATTG 106613 29 96.6 33 ............................A GTGATTCGCAAATCCGGGCGACCAATAAAATAC 106551 29 100.0 33 ............................. GTCACCCTCTGCGGCATAAAGCGCTTCACCCCA 106489 29 100.0 32 ............................. AGGGCGAGCGGTATTTATGCCTTAGCTTCTGT 106428 29 96.6 33 ............................T TGTCAGTCATATTGACTCCATTTTCTTTTCTGG 106366 29 93.1 32 ..........................T.A ACAAACTCAATACCTTCGCGTTTAGCCGCGTT 106305 29 96.6 33 ............................G CGTTATCCCGTCCATGCCGGGCTTTCGCACTAA 106243 29 100.0 32 ............................. ATCGCCGGAAACGTGGCCCTCGCCGGAAAGAT 106182 29 96.6 33 ............................T AGGACATATGATCCGCCCAGGTACCAGTAATGC 106120 29 96.6 32 ............................T GAGGATGCCTCTGGCCTTGTATGACAGCCTGC 106059 29 96.6 33 ............................T ACGGAGACAACGCCATCTAGATCAGTCATGAGA 105997 29 96.6 32 ............................A GTGACTGAAGTTGTACCCAAAATCGTGGACAG 105936 29 96.6 32 ............................G AATCGGCAGTTTAGCATACTGAGTTGTACCGC 105875 29 96.6 34 ............................T TCCCGCTTCGATAAGTTGGGGAAGTAGTGTGACG 105812 29 96.6 32 ............................G GCTCTTCTTTCGATTCTTAACCGTTAGTGTGT 105751 29 96.6 32 ............................T TCACTGCTGCCCCTGTAGCCAAAAAGGCCAGG 105690 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ==================================== ================== 145 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : ACGCCGCCGGATATCTCGCACTAGTTCACGCGCACGGTAAGCGCTTGTGAGTTGCCCTCCCCACGCCCTCTGATTTCAGCGGCATATCACTGCTGCTCATACGTAACCGACTGTCACTCATGACCATCCAGCCCAGCGTCAGTCAAGGGAGAACTCGGGTCGTCCCCTCGGCGGGCACAAATACATCGGTAGGTCGATGCTCCGCCTCACTCAACCAACCACAGCAGACGCGGAGAAAGGAGCCTTCATGACCTACTCAACCCAGACAAAGCTCGGATACATTGCGGCCAGCATCGTCCTCGGAATCCCCATCGCCTTCCTCGCCGTTTTAGTGACAAGCAACATTGCACTGGTTTACCACTGGCCCTCCCCGCTCTGGATCGGTGCTCACGCAGCCGCTTGTACTGCCGTTGCGGGAGGGGTGTACTGTCTGCACAAAGCTGCCACGTCGGTTGCTGCACGCCGACAGTCCGAGAAGTTACCCTGGGCGACCTACACAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //