Array 1 240166-242263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOC010000003.1 Listeria ivanovii subsp. londoniensis strain MF8007 MF8007_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 240166 29 100.0 37 ............................. TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG 240232 29 100.0 36 ............................. ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT 240297 29 100.0 37 ............................. TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC 240363 29 100.0 36 ............................. TTCATTGGCGCTAATATAAACGCAATTAATAAGACT 240428 29 100.0 37 ............................. TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG 240494 29 100.0 36 ............................. GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG 240559 29 100.0 35 ............................. ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG 240623 29 100.0 36 ............................. GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA 240688 29 100.0 34 ............................. TTTTCAGACTAAGACAGCGGATTTATATCATATT 240751 29 100.0 35 ............................. ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT 240815 29 100.0 35 ............................. ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA 240879 29 100.0 34 ............................. AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT 240942 29 100.0 35 ............................. AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC 241006 29 100.0 36 ............................. AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT 241071 29 100.0 36 ............................. AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA 241136 29 100.0 36 ............................. ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA 241201 29 100.0 35 ............................. GCGATACAAACGTTAGAAAAGTCAACGATTATTGC 241265 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC 241329 29 100.0 36 ............................. GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT 241394 29 100.0 37 ............................. ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG 241460 29 100.0 37 ............................. ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA 241526 29 100.0 35 ............................. TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA 241590 29 100.0 34 ............................. TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC 241653 29 100.0 37 ............................. TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA 241719 29 100.0 35 ............................. GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC 241783 29 100.0 34 ............................. GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA 241846 29 100.0 34 ............................. TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG 241909 29 100.0 37 ............................. TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT 241975 29 100.0 36 ............................. CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG 242040 29 100.0 37 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC 242106 29 100.0 35 ............................. AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA 242170 29 100.0 36 ............................. ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC 242235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 33 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGAATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGAAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAAAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 253762-255169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOC010000003.1 Listeria ivanovii subsp. londoniensis strain MF8007 MF8007_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 253762 29 100.0 39 ............................. GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAGG 253830 29 100.0 37 ............................. AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATACG 253896 29 100.0 36 ............................. GTTTTTTTGAATGACGAAGTTGAATATAAGCATATG 253961 29 100.0 37 ............................. ATATTATCAATTAACGCCATCACGATGGCAATTATCG 254027 29 100.0 36 ............................. AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCCG 254092 29 100.0 37 ............................. GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATCG 254158 29 100.0 35 ............................. ATCATATGCTGGGTATGGTAGACTTCTCATCAGAG 254222 29 100.0 35 ............................. TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTCG 254286 29 100.0 38 ............................. AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAAG 254353 29 100.0 39 ............................. CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAGG 254421 29 100.0 37 ............................. TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCGG 254487 29 100.0 37 ............................. ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCTG 254553 29 100.0 36 ............................. TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTCG 254618 29 100.0 37 ............................. CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACGG 254684 29 100.0 37 ............................. AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTTG 254750 29 100.0 35 ............................. GCCAACCACGTACTTACTCCGGTTTCCATTTTCGG 254814 29 100.0 35 ............................. ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAAG 254878 29 100.0 37 ............................. TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGCG 254944 29 100.0 36 ............................. GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTTG 255009 29 100.0 36 ............................. CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGAG 255074 29 100.0 38 ............................. CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTTG 255141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TTCTTACAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTACCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //