Array 1 3673-3860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUJO01000008.1 Burkholderia cenocepacia strain VC4558 VC4558_contig49, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 3673 38 97.4 37 .............................G........ ACCGATGCCGGTCGAAGTCGACGTCGACAGCGAGTTG 3748 38 94.7 37 ....................G.....C........... GTTGATCGCGGTCGAGGTCGACGTGGACAGCGATGCC 3823 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 97.4 38 ACGTTGCTGTTCGTCGTGCTCAGGCCGGTCGACAGCGA # Left flank : CCTTCTGGCCGAGGAAGGTCGACGTGCCCACGCCCATCCCGAAGTTGGCGTCGCGATCGAGCTGCGGGATCGACGCCATCGCGCCGACGGCCGCGATACCCTGCTTCGCCATCTGGTCGGTCTGCTGCAGTTGCGAACCCAGCGAGTTGATCTGCGCCTGCTGGCCCGACAGTGCCGTCGACAGCGTCGTCTGCACCTGCGTCAGCTGGTTCACGTTCACCGCGTCGGTGCCTTGCGTACCCGGCGCGACGTTCGTGATCTGGCGCTGCTGCTGGTCGCTGCCGACCGACACCACGTTCGAGCGACCGCCGTCGTTCGAGCCCGCGCCGATCGCCACCGAGTTCGAGCCGGCGGTGACGACCGGGACGTCGGTGCCCTTGCCGTTCATGTCGGCCGCGATGCCGTTGTTGTTGGCTGCACGCGTCGTGTTGTTGTTGATCGACGTCGACAACTGGTTCAACTGGTTGTTGATGTTCGTCACGCCGGTCGACAGCGAGGCC # Right flank : AGTTGATGCCGGTCGACAGGGATGCGACGTTCGACGCGGTGGACGTCGACAGCGTGTTGATCGCGTTGTTCGTCGCGTTCAGCTGGCTGCCGTTGATCGCGTCCGTGCTCGTGGCCGAGATCCGACCCGCGGCGACGTTCGTGATCTGGCGTTCCTGGCCCGGTGCGCCGACGCTCACCACGCCGACCGGCGAGCCGCCCGCGAACGGGTACGTGACGCCGCCGATCGTGGCGCTCGAGGTGCCGACCGCCGCGGCCGTGACCGAGTTCGCGCCGAGTGCGATCGAGTTCGCGACGTTCGCTTGCGCGTTCGTGCCGAAGGCGAGCGCGTCGGCGGCCGTGGCCTTGGCGGCCGAGCCGTAGGCCTGTGCGCCGGTGGCGCTGGCCGTGGCCTGGCTGCCCAGCGCGATCGTGTTGTCCGCGGTGGCCTGGTTCGAGCTGCCGAGGGCGAGCGCGCTGGCGCCGGTTGCCGTGTTCTGGTTGCCGAGGGACACCGCGCCG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGTTGCTGTTCGTCGTGCTCAGGCCGGTCGACAGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2807634-2807821 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUJO01000009.1 Burkholderia cenocepacia strain VC4558 VC4558_contig60.61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 2807634 38 100.0 37 ...................................... GGCATCGCTGTCCACGTCGACCTCGACCGCGATCAAC 2807709 38 94.7 37 ...........G.....C.................... CAACTCGCTGTCGACGTCGACTTCGACCGGCATCGGT 2807784 38 97.4 0 ........C............................. | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 97.4 38 TCGCTGTCGACCGGCCTGAGCACGACGAACAGCAACGT # Left flank : ACGGCGCGGTGTCCCTCGGCAACCAGAACACGGCAACCGGCGCCAGCGCGCTCGCCCTCGGCAGCTCGAACCAGGCCACCGCGGACAACACGATCGCGCTGGGCAGCCAGGCCACGGCCAGCGCCACCGGCGCACAGGCCTACGGCTCGGCCGCCAAGGCCACGGCCGCCGACGCGCTCGCCTTCGGCACGAACGCGCAAGCGAACGTCGCGAACTCGATCGCACTCGGCGCGAACTCGGTCACGGCCGCGGCGGTCGGCACCTCGAGCGCCACGATCGGCGGCGTCACGTACCCGTTCGCGGGCGGCTCGCCGGTCGGCGTGGTGAGCGTCGGCGCACCGGGCCAGGAACGCCAGATCACGAACGTCGCCGCGGGTCGGATCTCGGCCACGAGCACGGACGCGATCAACGGCAGCCAGCTGAACGCGACGAACAACGCGATCAACACGCTGTCGACGTCCACCGCGTCGAACGTCGCATCCCTGTCGACCGGCATCAAC # Right flank : TGGCCTCGCTGTCGACCGGCGTGACGAACATCAACAACCAGTTGAACCAGTTGTCGACGTCGATCAACAACAACACGACGCGTGCAGCCAACAACAACGGCATCGCGGCCGACATGAACGGCAAGGGCACCGACGTCCCGGTCGTCACCGCCGGCTCGAACTCGGTGGCGATCGGCGCGGGCTCGAACGACGGCGGTCGCTCGAACGTGGTGTCGGTCGGCAGCGACCAGCAGCAGCGCCAGATCACGAACGTCGCGCCGGGTACGCAAGGCACCGACGCGGTGAACGTGAACCAGCTGACGCAGGTGCAGACGACGCTGTCGACGGCACTGTCGGGCCAGCAGGCGCAGATCAACTCGCTGGGTTCGCAACTGCAGCAGACCGACCAGATGGCGAAGCAGGGTATCGCGGCCGTCGGCGCGATGGCGTCGATCCCGCAGCTCGATCGCGACGCCAACTTCGGGATGGGCGTGGGCACGTCGACCTTCCTCGGCCAGAAG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTGTCGACCGGCCTGAGCACGACGAACAGCAACGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //