Array 1 955880-956179 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVY01000002.1 Bittarella massiliensis strain DSM 4029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 955880 33 97.0 34 ................................C CTACGCTAATAATTCCCGCGACAGTGGCAACAGG 955947 33 97.0 32 ................................C ACAGGTCATTGAGCAGGAGCAGCAGGTCTTTG 956012 33 100.0 34 ................................. TTCTCTTCCATTTTCACTTCCTCCTAATAGGCGA 956079 33 100.0 34 ................................. AGGCAATTTTTAAGGACAAACGCTCGGCTTTCTG 956146 33 90.9 0 ..........A........T...A......... | C [956171] ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.0 34 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATT # Left flank : TCTCCATCGAGGGGGAGGGGGCGCTGGCCAAGTGTCTCTGCCATGAGCTGGACCACCTGGACGGGGTGGTCTTTTGGGAAAAGGCTATCTGTCAGGTCTTTCCCCAGGAACAAAGCCAATAGGACGGTTTGTGGCTGGGATGAAAGACAGCTGCAAAGGGAGGAGAGTAGATGAGGAGCCCCTTCTCTGACTTTTGGAGTGGACGCACAGGGCGCTCGTAGAAGGGGAGCTCTTTCGCGCCAGTTTCCCTCTTTCGAATTGACATACCCGATTTTGATTGGCTTTTTTGCGGCTCTTAAAATAGCGCAGTTTTACCCTCATTTTGGGGCGGTGCGAAGTCCAAGCGGACAGAAATTCCCCAGTGGGTTCGCACCGAGGAATTGCAAGATAAGTAGATAGAGTGGAAAAGAAGAGAAGACAGCTGCCAAAAAATTGACAAGTGTTTGTGGAGAAGGTATATTGAAAGCGCAAACAACAGTGTGCTTTTGTGTATGTTTGCT # Right flank : TTTATCAGTGTTCAAACCCAAAATGACCTCACTGGTCATATCCCGTGCAGATGCACATATTGCCACTTCTCTGGTTTTTCCCACGGAGTTAGAGGTTGCGCTTACATGGTAGCCATGTGCCGTGCGGGAAGAAACGGCACAGCAGATGCAAATCGCGTATTTATAAAAGATCCCCCTTTACAGGTGCGCCAAGTCTGTGGTCACCATCAGAGAAATCCATTGGCAGACAAATGCGCCGATGAGAAAAAGGAGGCAGATGTGTGAAGAATAGAGGCTTCTTGCTGGTGAGGGCCATCCCCATTTCGTTCATCGTTCTGTTTTTGGCGAGGACAATGCTGAAAGCACAGAATGTTTCGAGCAGGATTGTGATCCTCCCCTTTTTGATTTGCGGCCTCACAGAGCTTTTGCGAACGATATTTTTGGCAGTGGGTTGGGAGAAGGCGGCAAAGCTGCTCTACAAGGTGTACGCCGCCAGCTTTTTGCTCTACGTGTTTGGTTTC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 968070-968368 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVY01000002.1 Bittarella massiliensis strain DSM 4029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 968070 33 100.0 32 ................................. GTCTGTGTGTTGCGTATCCATACATAGAAAAG 968135 33 100.0 34 ................................. AACTAGCCTGTGGAGAAAGAAGGGGGTTCGTACC 968202 33 97.0 33 ................................C CCAAATCATCCACACAAATATAGTCCCAGTAAT 968268 33 84.8 34 ..........G..TA.....G...........T ACTCATTGGAGCATGAGAGGGAGCTTCGCGTCTT 968335 33 69.7 0 ....T......T..A.....GACC..A....CT | C [968363] ========== ====== ====== ====== ================================= ================================== ================== 5 33 90.3 34 GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Left flank : CGAGTATACCGGCTTGCGGCCGGGCGAGAAGCTCTATGAGGAACTGCTGATGGACGAAGAGGGGATGAAAGAGACCCCCTACGAAAAAATCTTCATCGGCCGGCCGATCGATATCTGTCCCGACGACCTCTGGCGCTCTCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAAATCGTGCCCACCTTTACCCCTACCCCCAACAATCACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAGGGCCGCTCTTTTGCGTCTGGGTGGAGAGCCGGGAGAAATAGAGACTTTGGTGCGAACCCCAAGTGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATATCGGCGTATTGCCGGGGAAAAGGGAAAGGCGGCGGATAGAGGAGATTGATTTGACAGGGTTTTGTGAAAAGGGGTATAGTAGAAGTGTAAATTGACACTGGTTTTTGTGCCAATTTGCT # Right flank : TGCGCTTGTGCAACTGCCCTTCCCTTTTTGTCCCCCAACAAAGAGGGCCCCCGGGTATTCCCGGAGGCTCTCTTTTTACTCTATGGCATCAAAAGGTGATTATCCTTCGCCGCCGTTCTGGTTTCGGGTGCGCTGGATGAGATAGACGGTGGACAGCAGCAGGCTAACCCCCAGAAGGAGGAGCGCCGCCAAATCCCAGAAACAGGCGGCGTGGACGGCGCAGAAAACGGCCGCAGCCGCCAGGGCGGTGAGGACGACAAAATCACAGGTTTTCACGGGCTTTTTCCTCCTCTCTGTCCAGTTGGCGCTTGCGCGTCAGGAGATAGGCCAGGGCAATTGCCATCAGCACCAGCGCGAGCCAGTGCACCCAACAATCCGCCGGCTGCCGGTGAGCGTGGCCGCTCAGTTCGCCGGTATAGGGCCCGCTGCCGGCAGAGTTCTGCCCGCTGTCGGCGCCGTCGGAGACGATGTCGCTTCCCTCCACCTGTCGCTCGGTGAGG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 348968-348740 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVY01000001.1 Bittarella massiliensis strain DSM 4029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 348967 26 100.0 41 .......................... ATGGAGCGGATGTATCAGAGGGGCTTTTGCCGGGTCTCCTC 348900 26 100.0 41 .......................... TGGCCCTGGATGGCCCCGCCGGTGTCTTGCACCGTCTCCCT 348833 26 92.3 42 ...A..C................... GAGCTTGACCGTCGTCGCACAGGCCGCGACCCCCGTCTCCCC 348765 26 88.5 0 .......G......A...T....... | ========== ====== ====== ====== ========================== ========================================== ================== 4 26 95.2 42 CTCGCGTAGGGGGAGTGGATTGAAAT # Left flank : GTGCGCCGGGCGTCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGGCGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGGCAATCACACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCAGTTGTTTTGGCGGCTGCTGTCGGGGGGAAGGGCAACGTTTCATGCGCGTCCCCTCCCCTTCCCTGGGCTGAAGTGGGAAGGCGGCTGCGCGAAGGAAAGGGAAGAGGGCTGGGCGGCGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCCTTGCGCGGCGGGTGCGAAGGGCAAGCAGACAGAAAACGCCCGGGCCCTTCGCACCGGGAAAACGCCAAAAGCAGGGCGAAAAAAGGGTCGCTCAAGGGGTAGGCGGACAGGGCGGTTGACAGCAGATTGGGGAAGTTGTATGGTAAAGACAATTAAACAGTCTCCTTTTTTGGAGATGTTTGCTGTCTCCTC # Right flank : CAGAGGTTGCTGTTGGCAACCAGAGTAGGGGTGTAGTCTCTCCTCGCTCGTGGGAGTGGGCATTGGCTAAAACCCGCTGCCTTGCGGCCCTCTACTCCCGGCTTTCAAGTCCTCTTCTGTCTTGAAAAAGTGGGTGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACAAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGACGGTTTCGTCTTCCCCCTCCCGAGGAGCGATCCCGAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACACCCACCAAACCCAAAGAGAGAGGGGAAACAAGCCGTTTCCCCTCTCTCTTTTTGTCGGCAGCCGGCCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCACAGCCGACGATGCCGTCGGCACTCAGCCCGTTGCGCCGCTGATAGTTCACCACGGCGGTGCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGTAGGGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 412424-412662 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVY01000001.1 Bittarella massiliensis strain DSM 4029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 412424 34 100.0 33 .................................. AACATCAATAGTGGCATCAAATTCAGCATTAAG 412491 34 100.0 35 .................................. AAAAACATATTCAAGCCAATCATAAGCCCAATCGG 412560 34 100.0 35 .................................. ACCTCGACCTATGTCATCGTGGCCAACCCCAAAAA 412629 34 85.3 0 .........C..............A..CCA.... | ========== ====== ====== ====== ================================== =================================== ================== 4 34 96.3 35 GTCTCGCTCTCACGCGGAGCGAGTGGATTGAAAT # Left flank : GAGTTTCTGCCGGTGGACATCTACAAGTCCGGTGCCACCGACTACCGGCTGGAGGACGGCAAGATTCGGCTGCCCTTCAACTGCCTGCGCGGGCTGGGCGATACCGCCGCCATCGCCCTGGAGGAGACCATCAAAGAGGGGGGCTTCATTTCCATCGACGAGATTCAGACCCGCTCGGGCATTTCCAAGACGGTGGCGGACAGCCTCAAGGAGTGCGGCGCCTTCGGCGACCTGCCCCAGTCCAGCCAGATGACCTTCTTCTGATTTCTCCGCCGTTTGTGTGCGCTTCTATTCGGCAGCCCGCCCCTCTCTGGGGTAGGCTGCTTTTTGTGCGAACCCCAAGCACACACCGCTTCCCCGGGACCTTCGCACCGAAAAATTGGATAGCGGAGTGGGGGAGAGGGGGAGGAATGGGGGAATAGACCTTACAGTTTGACATTTGTTTGTGGAAGTTGTATTGTTGTGGTGAAAGAATGCCTGCCTTTTTGTAGGTGTTTGCT # Right flank : TCTTTCTGCCGATTTGTGAATTGCCCTGCTTCCTACTTTTTAGAGGGCAGCAGGGGACATCTTACCCCCCACAAAGCACGTTCCCATTCCCCCATCAAAAAAGGAGAGAGCCGGACAGCATCACCTGTCCGGCTCTCTCTTTCTTACTTCTTCTTGCGGGGCTGGTTTTGCCCTCTCTGCCCACCCTGCCCAGGGGATTTCCCTTTGGCCGCGGGCCGTCCGCCCGGCTGTCTGGATGCGGGCTGCCTGGGCGGAGCGGGTCGCTCCCTTCGGGGGGGCCGGGGCTGTTTGGGGGTGGGCTCCAGGATCTCCATGGGGTAGGGGTGGTTTTTGACCACCGGGATCTCCTGCTTGATGAGCTTTTGGATGTCCTTGAGATAGGGGATCTCGTCGAACATGCAAAAGGAGATCGCCGTGCCGCTGAGCCCCGCGCGGCCGGTGCGGCCGATGCGGTGGACATAGGTCTCCGGCTCGTTGGGCAGGTCGTAGTTGATGACGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCTCACGCGGAGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 819711-819404 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVY01000001.1 Bittarella massiliensis strain DSM 4029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 819710 34 100.0 34 .................................. AATATCGTAAAAGAGTTAAGCAAACAATGGTTAC 819642 34 100.0 35 .................................. ACTTGTAAAATACGCAACTTGCGCAGATACCCCGG 819573 34 100.0 33 .................................. GCTTGACTTGTCCGAATGGAACGTGTATTATAA 819506 34 94.1 35 .........T.......................T CACTTCGGTGAGCCAGTCGCTGAGTGAATCGGTCA 819437 34 91.2 0 .........T......................CT | ========== ====== ====== ====== ================================== =================================== ================== 5 34 97.1 34 GTCGTCCCCCCACGCAGGGGACGTGGATTGAAAA # Left flank : CAGGCGCCGGTCCACTTTCTGGTCATCCCCAAAGCCCACATCGCCAGCTGCGACGAGCTGACCGAAGAAAACAGCGCCATTGTCGCCCACATCTTCGCCACCATCGCCAAGCTGGCGGGGGAGCTGGGGCTGAAAGACGGCTACCGCATCGTCAACAACTGCGGCAAAGACGGCGGCCAGACGGTGGGTCACCTGCACTTTCACGTGCTGGCCGGCCGCTCGTTGGCCTGGCCCCCGGGCTGATTGCCCTGCCCTTGCATATCCCTCGATTCAAAAGAGCTGGACGCGTCTGCGTCCAGCTCTTTTGCGCGCTTTTTACCCAATTCGCGGGTGCGAACCCCAAGTGCACACCCATTTGCCGGGAGGTTCGCACCGCAGAATACCGGCCTTTTGCGGTGGAATGGAGAGGTTTGGGAAAAATGGGATCTGCATTTGACAGGATTTTGTGGAAAGAGTATCCTAAAGAGGAAAGCAGCGTCTTGTTTTTGTGCTGTTTTGCT # Right flank : GGTATGTCCATGAAATCGCATGACCCCTCCCAGCGGATCGTCCCCTATTCGAGGACACAACCCAAAACTTTAGCGTCTGCACAGACACAGCCGCTGTGCAAACTTCCTATTCCAAAGCGCAACGCCCCACATACGCCTCACAACAAAAAGGAGCCGGAGCAGCACCTGCTGCTCCGGCTCCCTCTTTTTATCCACTTGATCTGTCAATTGAAGTTCAGACGATGACATTGCGGGGCTCTCCCCGGCAGAAGGCGGCGATGTTTTCCCCCAATAAGTCGACAAGGCGCTGGCGGGTCTCCAGCCCCTTCCAACCCATGTGGGGGGTGAGGACCACGTTGTCCAGGGTGTAGAGCGGGTTGTCCGGCCGGGGGGGCTCCTGCTCCAACACATCCAGTCCGGCCCCGGCAATTTGTCGGGCGGCCAGGGCCCGAATGAGGGCGGGCTCATCGATCAAAGCCCCACGGGAGGTGTTGATGAGAAAGGCGGTCGGTTTCATCTTG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCCCACGCAGGGGACGTGGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //