Array 1 114893-115392 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYT01000005.1 Thermomonospora catenispora strain 3-22-3 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 114893 25 88.0 54 ...............A.......GA ACCGAGCGGCTGAACCTGTGCGAGCGGATCAGCATGTTGCCTGCTCGCTTGCTC 114972 25 92.0 39 A..............A......... CCTCAAATACAAGGCGCACGCTCGCTGAGGGTGAGCGTT 115036 25 96.0 42 ............A............ ACTGCTTCGGGTGCTCCTGCACGATACCCAGGAGTACGCGTT 115103 24 80.0 37 ......T...TG..A.-........ CTCTCGAGCAGGCTGCCCGGATCGTCTACAACGCGGT 115165 25 88.0 44 .T........T..A........... ACCCGCTACCAGGTCACCTGCGCCATCAGCCGCCACCTGCCGTT AC [115173] 115236 25 96.0 42 ....C.................... ACTGCTGCGCACCGCCCCGCCCCCGGCCGACCACACGGCGTT 115303 25 100.0 40 ......................... ACCTCCAGGCCGGCCCGGTCAGCGTCCGCCAGCAGCGGTT 115368 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ====================================================== ================== 8 25 92.5 43 GCGATCCCTCCAGGGGTGATGAGCG # Left flank : CGTTACGGCCTTTGCAAGCCGGGTGTCAGGGGGTCGACTCCCCTAGGCTCCACCCAGCCGAAAGCCCAGGTCAGAGCAGCTCGCTCCGCCTGGGCTTCGATCGTTTGGGAGGGCTGTCACCGGCGCGCCCGTCAGGTGCCCGATCGGGGGCGCCGAGACCGCCGACCGGCAGCGCCACACCGCCCAGCCCGAGCAGCAGCCCGGTGAACGCCCGTTCGGCGGCGGCCTTGGCGGTGAGCGCGCCGGCGAGCCGGCGGCGATGGTCGTCCGCGGCATGCAGACGGGTCGTCGCCGCCCGGCCGCTGAACGGTGACCATCGGACCGGGCGCCACCCACAGCCGCCGGCCAGGGCCCTCACTGCCCGGTAGCCCTCCTTCCAGAGGGTGATCGACTCCTGCGTCGTTTTGGGGAAGCCTCGCAGCCGTTCTCGTTGTGCCGCCTCTGAGGGTGATGAGGACCTCCGTGCGCTGATCACCACAGCGGCCGACTGCAGCCGGGTC # Right flank : GACCCCAGAGTAAAACCGCAGGCCAGGGCGACGGAAGCCCGCCGGATACGGGCTGGTTCTGCAACGGATCGCCGGTTGTGCAACCGCCCTGGTAGAACGCACGAATCCCGGACGGCAAGGGGTGAGGACGCCTCACGGGCACGGCGGCCCGGCGTTCCTCCTCCTGTCCCCCAGGCTGATCGAGCGCCCCTTGGAAGGCTGCACCGTCCCCCAGTCTTCCTGCGGCTCGGAGCGCTCGTCCGCGTGGGCCCATCGTCTCGATTTTCGGCCGTCCAGGCGGACGACGGCCGCTCCAAGCCGGTCGCACCGAGGTCGCACCGGAGGGCACGGGCGAGGCCGCGCTGAGATCGCGCCGGGCATGAGCGAGGTCGTGCCGGCGTCTGAGCGAGGGCCGTGTCGGGAACGCGAGCGGGATCGTGAGCAGAGTCGTGAGAAACACAGGGGGCGTGTGGAGTCGGGAGATCGGCGGCGGGGTAGAGGCGACCACGGAGAGGTTCGGA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATCCCTCCAGGGGTGATGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 28842-27532 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYT01000033.1 Thermomonospora catenispora strain 3-22-3 Scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28841 29 100.0 32 ............................. TTCCGCCTGACTAGCGGGTCTTGGAGCTTCCT 28780 29 96.6 32 ............................C TCGCATAAAACGTCAAGCTCGATTCCTCAGCG 28719 29 100.0 32 ............................. GGGGCGCAGGGCCGCGACCTGTCCGGCGGGTG 28658 29 100.0 32 ............................. CGGTGAGTCGCTCCAGCTGTGTCCACCGGCGC 28597 29 100.0 32 ............................. CACATCACCGAGCGCACCGCTCGCCATGCCCT 28536 29 100.0 33 ............................. TCTCCGCAGCCGCGTTAAGGCGGTACACCGCAG 28474 29 100.0 32 ............................. TGCCGACCGGACTCCGTCCGTTCGGCGAGCCA 28413 29 100.0 32 ............................. TCTACGTGGATGATCGGCCGGGTCGGAGTTCC 28352 29 100.0 32 ............................. GAGCAGCTGGCGGGCAGCGAGCAGGAGCTGCT 28291 29 100.0 32 ............................. GACCAGCAGACATGAGCGTGTATGAATTCCCC 28230 29 100.0 32 ............................. ATCCGGTCGCGTTCGCGCTGGATGTCACTCCG 28169 29 100.0 32 ............................. CCTCATCCGCCTCCGCCGCACCAGCAACGGCA 28108 29 100.0 32 ............................. CCGAGGCCGGGCGAATATTTCACCTGGCCGTC 28047 29 100.0 32 ............................. CGAACTTGTCACGGAGCGTAGTCACGAAGGCG 27986 29 100.0 32 ............................. CCAGCCCGCCATCGCCGAGCAGATCCGCGCCG 27925 29 96.6 32 ............................T CCATGCTGGCGCGGGTAGACGCCAATGGGCGT 27864 29 100.0 32 ............................. CAAGCTTCCAAGCTTGCTTGCTTAGTCGAGGC 27803 29 100.0 32 ............................. GGGTTGGGGAGGGCTTTGACCCCCAGCAGCGG 27742 29 100.0 32 ............................. TACCGGCTGGTGCGGGCGGCGGCGGACCTGGC 27681 29 96.6 32 ...................A......... ATCCCACCGTGCTGGGAGCAGCACTCCGACCT 27620 29 100.0 32 ............................. GCCGTCGACGAGCCGATCCGGCGGCTCAAGCT 27559 28 72.4 0 .G......T...T......AA-..GG... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.3 32 GTCCTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : TCTCCCGCGCATCGTCGCCGACATCCAATCCCTTCTGGACCCCGATGACGGCACTCGCCGGGAAGACGCCGAGGAGGCCGCCGAGGAACTCGTCGACCTGTGGGACCCCGACTTCGGGCGCCTGGCCGGCGGTACCAATTACGGACACGACTACGACGACTGACATGGCCACCATGACCGTCATCGCCACCACCGCCATCCCCGACCACCTACGCGGGGCCCTCACTCGCTGGATGATCGAACCAGCACCCGGCCTCTATGTAGGCAGCCTCTCCGCCCGCGTGCGCACTGAGCTGTGGGCGGCCGTCGCCGCATCTGTCGGTGATGGCGCTGCCGTTCTTCTCCATCCCGATGCCAACGAGCAGGGTTACACCCTCCGCACCGCCGGCCAACGCCGTCGAACCCCCATCGACTTCGATGGCTTGACCCTCATTGCCCTCAACCCCGCCGAGCCGGATAACGAATCAGTAAACCTCTAGCATCGTCCCAGGTCAGAAAGT # Right flank : ATAAGCGGTCTCAGCTTTCGCTCTGGGGAGGGAGAGTTCAGAGAGATGACCCAGTAGGTGCCGGTTCTGGTGGCTCTGTGGCCTTGCTGTACGTAGGCAGCCTTGAGTTGAACGTTGCGCGGCATCCATTTGGATGCAGGTCGTCCCTCAGCTCTCCCGCAACCCATCGTCGGCCGCGTGCCGTCCGTCGGCGCCGTTCGCGCCCTGGCGTTCCCGCATCAGGTCCTCGACGGCCTGGGGGAGGGTGGTCTCGAAGTCCAGCAGCTTCGCCCAGTCCGGTTCGACGGTGATGACGGCCATCCGGTCGTACAGGTCCCGCACTCCCTGCTCCCAGCTCTCGAAATGCTCGGCCGGGACCGACTTCCGGGCCGCGTCGATGTAGGAGTCCGGCACCTCGTCGACCATCTCGACCCGTGCCGTGCCGCGGATCAGCAGCGCCCGCGGCGGCCATTCCCGTTCGGTGTCGATGGTGAGCGCCACATGCGGGTTCCGCCGCAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38548-39736 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYT01000033.1 Thermomonospora catenispora strain 3-22-3 Scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38548 29 100.0 32 ............................. CCCCGGATCTCTCCGGTTGCGTGGTTGTGGTC 38609 29 100.0 32 ............................. GCGATTCCGGCGAGCGCGTCAAGGCGCTTCAG 38670 29 100.0 32 ............................. ACGCTGAACGACAACGCCCAGCACGGCATAGA 38731 29 100.0 32 ............................. TCCGCCGAGGAGCTGGCCGCGCAGGCCGTTCC 38792 29 96.6 31 ............................C GCGCCGGACAGCGGAGCAGCTTGCGCGCGCC 38852 29 96.6 32 ............................A TGAACAGGAACGCCGGGTCGTCGGACAAGCCG 38913 29 100.0 32 ............................. ATGCCTAGGTGTATGGGGACTTGGAGAGGGAG 38974 29 100.0 32 ............................. CCGGGTGGCGATCTGCATCTGGGTCTCCGGCT 39035 29 100.0 32 ............................. ACACCGGCGATATCCACGCGTGGCCGTGCGTT 39096 29 100.0 32 ............................. GTGGAGAAGATCACCGGCCTGGCCCGCACGAT 39157 29 100.0 32 ............................. TCCACCTGCATCAACACCATCCTCTGCTCGGT 39218 29 100.0 32 ............................. CCGCCACACGCTCGACCTGCGGCCCAAGAGGC 39279 29 100.0 33 ............................. CCCTTGCCGCGCAGCCAGGCGCGCAGCTCCTTG 39341 29 100.0 32 ............................. GCCGCGGCCGATGAGCGGCTGCTGGCCGCCCT 39402 29 100.0 33 ............................. GGCCAGGGCTGGCAGCTCCCTCCCGGCCAGCAC 39464 29 100.0 32 ............................. TCGCCCTCCCATGAGTCGATGTGGGCGGGCTG 39525 29 100.0 32 ............................. AGACGTTCGACCGGCAGCAGGGGGGCCGAGGT 39586 29 100.0 32 ............................. ACGCGATCCTCGCCGCCGACGACCTGGCCTAC 39647 29 100.0 32 ............................. TGCGCCTGGTTGTCTCCGCCCTCGATCCGGTG 39708 29 93.1 0 ...........C................T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTCCTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : CGTGGTCTTCGCCGTATTCAGGGGACTCTGTGACCAGCCTCTGATAAAGGTCATCGACCAGGACCTGAAACGACGGCGATATCTTGCCTATATCGTGCAAACCAGCCCAAAAGCATACAAGGCTCCTCATGTGCGCAGCGATGCGTTCGCCGAGCACATCCGCACGCAGAACTCCCAGCCCTGCGGCCCATGCATCCCAGAGCGCCCCGGCCATCGCCGCCGTGTCGATGAGATGGCAGACCACCGGGTAAGGCCCTGGCAGCCCGTCACACTTGCCCCACAGCCGCGCATCAACAGGCCGCAGAGAATCTCCGTCGAGATCATCCATAGGAACGAACCCCGCCGCACAAGTCGCAACTTTGACTGCAGGGCAACTAGACCACACACCACCGACAAAATCGCCGGGGCGCATAGACTCCCCTCGTGCCAGACCGCCCACCGCTCTGCCCCACAAAGGTCACAGATCAGTAAAATCGATCTGGAGGCCCAGGTCAGCAAGT # Right flank : TCCCACGTTCAGGTCTCGGCGGATCTCGTTCACNTGGTTGTCTCCGCCCTCGATCCGGTGGTCCTCCCCGCCCGAGCGGGGGTGATCCTCCCACGTTCAGGTCTCGGCGGATCTCGTTCACGTCCTCCCCGCGCGAGCGGGGGTGATCCGGCGGCGTCGGCGGCGCGGGCGACCTCCCCCAGCCGTCCTCCCCGCGCGAGCGGGGGTGATCCGCCGCTGGTCCTGCCGGACGTCTATGCCGCTCCGTCCTCCCCGCGCGAGCGGGGGTGATCCGGTTGCAGGTACGAGGCCCCTGCACAAGGCATTGTCCTCCCCGCGCGAGCGGGGGTGATCCGCCGGTCATGCCGCCCAGCTCCACCCAGCCGGAGTTCTCTCTGTTCGGGCGGGAGTGGTCTGGACGTGCGCATCACCGCTGGGTCGTCTTCCCACGGGAACAGAGCTGCCGGCGGCTTCAGAGCATTGAGCGGAACCGCCCCGGCACCAAAGGAGCTGCCCGCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 123138-118471 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYT01000008.1 Thermomonospora catenispora strain 3-22-3 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 123137 30 96.7 31 .............................G GCAAAAACGCCAAATACGCACAGGAAATGGC 123076 30 100.0 31 .............................. GAAGGCGGGGCGCTTTTCCGCCCGATATAAT 123015 30 96.7 31 .............................T CAACGCCCTCTTCGCCCTTGCTGCGGTGTAC 122954 30 100.0 31 .............................. GGCGCCGCCGGCGCACGGCCAGCTACGGCGA 122893 30 100.0 31 .............................. CGGCGCCGGCAGAGGGTAGGCGGCGTTCGGG 122832 30 96.7 31 .............................G CCGACGGGCGGAACTCCCTCTCCCGGTCCAC 122771 30 100.0 31 .............................. CTGATCGGGAGGGACACCACCCGCGGCAAAA 122710 30 100.0 31 .............................. GTCCGTTTGGGCTCTGGCGGCTGAGCGAATC 122649 30 100.0 32 .............................. GTCTCCTGCTCCGCTTCGTCGAACGTGATCGC 122587 30 100.0 32 .............................. GTCTCCTGCTCCGCTTCGTCGAACGTGATCGC 122525 30 96.7 31 .............................A CTTCGGGAGCGGTGACGCCAAGCATTACCAC 122464 30 96.7 31 .............................G GGTGCCGGCCCGTGAAGACCGGCCGGTCTTC 122403 30 96.7 31 .............................A TCCATGTCACGTCCAAGGGGGCCGTGCCGGA 122342 30 96.7 31 .............................A CCCGGCCGCCGGCGGCCTCAGGAGCCAGGGC 122281 30 93.3 31 ............................GG CTGATGCTCGGCAGGGGTCGATCGAGCGATG 122220 30 100.0 31 .............................. GGTCTGTCGATGAACGAGGTGCGGTCATGCA 122159 30 96.7 31 .............................A TCCGCGGCACCAAGCTCAAGTGCGGCAACTG 122098 30 100.0 31 .............................. GTGCCCTCCAGCACCTCGCCGGCGTCGTGGT 122037 30 96.7 31 .............................A TGCGGGACGTCTACACCTGGGTGATGGACCG 121976 30 100.0 31 .............................. GCTGTGCGAGGCGGTCGGGGTGTCCAAGGCG 121915 30 96.7 31 .............................A AGGGGCAGTGCCTGTGTCCGCCGCGCGTGCA 121854 30 96.7 31 .............................A AGGGGCAGTGCCTGTGTCCGCCGCGCGTGCA 121793 30 96.7 32 .............................A AGCGGTTCACGCCCTCACCGCCACCGCCGACC 121731 30 100.0 31 .............................. GTCCCGTTCGGGCAGCGGGCAGGGTCGGACA 121670 30 96.7 31 .............................A GCTTGAGCGCGACGAGGGCCGGGTAGATCGC 121609 30 96.7 31 .............................T CCCGGGCAAGCTCCGTGCTGCTCGGCACCCG 121548 30 100.0 31 .............................. GGGTGTTATCCGGGTCGATCTCCGGGACCAA 121487 30 100.0 31 .............................. GCGGCGATCTGCGTGGCATTCAGCCGCAGGG 121426 30 100.0 31 .............................. CTCGTCATCTGGGACAGCCTCAACGGGGAAT 121365 30 96.7 32 .............................G AGGCACACGCCCTGCTCGACGCCGGGTTCCGG 121303 30 100.0 31 .............................. GCCGGAAGCGCACCCAGCCGGTGACCGGGCG 121242 30 96.7 31 .............................G CTGGAATCACCGACAAATTGGGTGCGCGTAC 121181 30 100.0 31 .............................. CCCTTACAGGTTGAACACAATCGTCTCGCGG 121120 30 96.7 31 .............................T GGCCGACATCATCCGCGCCATCGACGGGCCG 121059 30 96.7 31 .............................G CGTACTGAGGCTGGTGGGCGCTGGTCCTCCA 120998 30 96.7 31 .............................A GCGTCGGCAAGCGGATTCGGGGTGCGCGCGC 120937 30 100.0 31 .............................. TCGTCCCCAATGTCGTACACCAGCCGGGTAG 120876 30 96.7 31 .............................T GACCAACCGCGACGTACTGCGGATCGAGCTG 120815 30 100.0 31 .............................. CGCGCAGCATCAACACCAGGCGGTTGGCCAG 120754 30 96.7 31 .............................T CAACGGTATGACCGTCGTTACCCCGTCCGGG 120693 30 96.7 31 .............................A GGGTGTCGGTGTCCCATGCGATGGGGTGGCC 120632 30 96.7 31 .............................G GCGTGGTCGATCTCCGCACCGGGGAATTGCG 120571 30 96.7 31 .............................A AGCCAAGCGTCAGTGGGACGGGCCCTCGCGA 120510 30 96.7 31 .............................G CCTCGGCCTGGGGCTGTCTCCGCGGGGTACG 120449 30 96.7 31 .............................T TCGTCACTTCGTCACATCAACACCAGTTCGA 120388 30 96.7 31 .............................T TGAAACCGGCGCATGGGACACGGTCGCCATG 120327 30 96.7 31 .............................G ATGGCGCTGATCAGACCCGAGCAGTCATATC 120266 30 100.0 31 .............................. CTTGCCCGACCTTGCCCGAGTTGGGCTAGCA 120205 30 96.7 31 .............................T CGTCGTCGGCGACGCCGACCTCACCCTGACG 120144 30 96.7 31 .............................G TTGTGGCCCGTGACTACCGGCTGAGCTGGCG 120083 30 96.7 31 .............................G GTCCCTGCTCTCATCCCTCAACCCGGCCCGG 120022 30 100.0 31 .............................. ATCCTCGGCACTCCTCACCGGCCACGCGAGC 119961 30 100.0 31 .............................. GGCATCTGGCTCAGGCTGGCGGGGTCCAGCT 119900 30 96.7 31 .............................T GGCGCGTGATCCTGGACGACCTGACCGAGCG 119839 30 96.7 31 .............................G AGCTGATGTCCTGAAACGACGGAAGGCCCCC 119778 30 100.0 31 .............................. TCCCGCGTGAGCTCGTCCAGGCTCCGGGCGA 119717 30 96.7 31 .............................A CCCGCAGGCCGGGGAACATCAGCCCGCACAG 119656 30 96.7 31 .............................G AGGGTCGCCGCGTTGTCGCCGCCGAGGGTCA 119595 30 100.0 31 .............................. CGGCGCTCGGTCGCCGCATCAGGATCGAGAC 119534 30 96.7 32 .............................G ACTTGACTCGGCAGACCCCCGCGACTTGCGCA 119472 30 100.0 31 .............................. GTGCCAGGAGCAGGAGGAGGCCACCACGATG 119411 30 96.7 31 .............................G CAAGGCCCGGAACCTGGCCCGCTACCAGCGG 119350 30 96.7 31 .............................A TCGAGCCCAGCCCACCGGCGCGGCCGCCGAG 119289 30 96.7 31 .............................G GTCTGGTCTGAGGAGGGAAGAATCATGGAGA 119228 30 96.7 31 .............................G CGTACTGAGGCTGGTCGGCGCGGATCCTCCA 119167 30 100.0 31 .............................. CGGAGGAGGTCGAGGAGACGGCGCAGCGTCA 119106 30 96.7 31 .............................G AGAAGGGGGAGCTTCGCGCCCGGCCCGGCGG 119045 30 96.7 31 .............................G AGGGGCTGATCCAGACGTCCCCGGGCCGCGG 118984 30 100.0 31 .............................. GGTTCGGGCGCAGGCTCTACCGGATCGGCGA 118923 30 96.7 31 .............................G TCGTGATCGAAAGGAATGATGAATCATGGCG 118862 30 96.7 31 .............................G GGCGGAAACCTTGTCGGTGCCGGTAAGCCGT 118801 30 100.0 31 .............................. GAGCGGAAAGGGCAAGGCGATGTAGCAGGAA 118740 30 93.3 31 .................A...........T CTTCCTCTAGCCGGACGGATTCGCTCACTGC 118679 30 96.7 31 .........................C.... TGTATGTGCTGGTGGTGCTGCCGCCCGGCAA 118618 30 90.0 32 ..........T.................GG CGTCTGGGCTGGTGTGCAGCTCCGGGGCGTAC 118556 29 70.0 27 C.....TT....T.......AG.A.-...A GGTGGAGCTGGATTGCCTTAGGCCTGA 118500 30 80.0 0 C.......T.....T........A..T..G | ========== ====== ====== ====== ============================== ================================ ================== 77 30 97.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATATCCCCGGGCGTCTTCATCGGCGGCCCCTCCGCACGCGTCCGGGAGGCCCTTTGGCGAGAGGTGCGCCAGTACGCCGGAGCCGGCCGTGCTCTCCTCGCCTACACCACCAACAATGAGCAGGGTTTCACCTTCGAGACGTGGGACCACAAGTGGCACCCCGTCGACTACGAAGGCGTCACCTTGATCCGCCGCCCTAAGCAGAGGCCTGCGGTCTCCGCGGCCCCGCCGCCGAGCGGCTGGAGCAAGGCATCCAAACGTCGCCGCTATAGACGTTGATCTGCTCCGTCGTCACGACGGCTCAGGAACGGCGGTCGCGTCCGCCACGGCAGGGCCTGCCGTCCGGGTGGTCTCAGGGCAGGCAAGGCCGTTGGACGGCGGCAGGTCACCGGCAGAGCTTCATCATGCCTCCAGCACGATTCCCGATGCCCGATATGTCTGAGTTGCAAGAAGTGATGAATTCCGAGGTCAGTCCGAGATAAAACTGCAGGTCAGCGAGT # Right flank : CGCCTTGCGTTCGCAAGCTCATGTCAGCGATTGCTGCCACGTTTGCAGGAATGAGCCCTATGGCTCTCGCCGGTGTGGTTGCACTCAGATCGCACGGAGGTGGTTCCTTCACCACTGCCGACGTGATTGGCGTTCCCGCTGCTCCTGCGTGCGTGAGGTGCTTTGAAAGGGCGTGCCGTCGAACCAAAGGACTGCTCTTATGTGTATGCAGGGACCCTTTCTCGTCAACTTTATGGCGCCGGGTGGTTGCTCCTATGTGGATAGAGATGGCGCCCGTTGAGGTTTCTTCTAGGTGAGGATCCTGCTGTCTCTATGTGTGATGAGGGCTTCTGATGTGAAATTACCGTGCCCTGCACCTTGTAGAGAGTACATAGTCTATGAGTGATCACTCACGTCCGCTAAGCTGCTCTGTAGGTGTGCAGATGAACCGACTTGCGGGGAAGTCGCCTTGTTTGCGCGCGGACTCTATTTCTTGAAGGGGCGCCGGCCGGGGCCATCCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132681-133138 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYT01000008.1 Thermomonospora catenispora strain 3-22-3 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 132681 30 100.0 31 .............................. CTCCTACCGAGCCCTGAAGGCCCAGGCCAAC 132742 30 96.7 31 .............................C GCAAAAGCCCGGGGCAGTGCGCCCCGGGCTT 132803 30 100.0 32 .............................. GCCTGCACCACCCCTCGCACGTGTACGACGTG 132865 30 100.0 31 .............................. ATCTTGGCCCGATCCGGCCAAACGCTGTACT 132926 30 93.3 31 ............................GA CACCGGCGCCGCGCTCACCATCCGGTCGGTA 132987 30 96.7 31 .............................T TGTGGCGGAAAGTTTCCGCGTCGGTGTCGAT 133048 30 96.7 31 .............................C AGCCGTACGGGCCCGGCCGGGCGCTGCGCCG 133109 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 8 30 97.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GAACGCCGGCGTGGCCTTACCGATGTCGTGCGTGGCGGCCAGCCACACCACCAGCCGCCGTGCGTCCTCCGCTCCCCCCGGCATCTCCGCCGCCACCAACCGCCGCACCTGCCACGGCAGCCACTGGTCCCACAGCAGTCCCGCGACAGCACCGCTGTCGGCCATGTGCCGCCACAACGGCAGCCATCCGCCGGTCGCGCGGTCATGCTTGGCCCACACGGCCCGAGCAGCGACCGACAAGCCGTCTCCCAGCAGCAGCGGCCCACCCATGTCAGGCATGTGCGCAGTCAAGCAGGAGATGCGCAGCGATGTGGCGTTTTTCAGGATTTCACTTGAAACTCATCTTCACAGGAGATCTTGAACCTGCCCACCTTGCCCCCACCGCCAGGCCCCGGGCAGGCTGTACCAGCGACCACCAACGAACAATGTCCGAAATGTCCAAGTCTGCAGAAGTGAGGATTTTCGCCCCTACTCCGCGATAAACCCGCAGGTCAGCGAGT # Right flank : GTGGCGGTTGAGACGCGAATTCACCTCAGGCGAACGACCCGTTCGGCCGACCCATTCAACTCGCCGATCCGCCCCCTGATTCGCATCCCGGTCCGGCGTTTCCACAGGGAAGTCCATGCAGTCTGCGGCAGTGTTCCCGATCGCGGGGCATCGGCGGGCTACCTGCGGAAACGGCGGGGTGAAAAGTTCACCGCAGGCCATCTGTCGGGTCCGGGTTCATACGGGTCTGCAAAACCCCGCCCTCTCCCGATGCCGGGCCTGAGGTCCGGGACGTTCCTCGGAAGCCGATGTTCGTTCGTCTTGGCCGAACGCGATGCAGTCTGAGCAGGCGCACATTTCGTCGTGGAAATCTCATGGGATTGTCCTGACGGGCAGGGAACGGACATGCCGGGGCGAAGCAGGTCCAGGGTGTGCGGGTATGCGATGCACTCGCCTGGAATCCGCAAAGCCCGCACCAAGGGGAGCCCTCTGCGAGAGGCCCGCCGTCCCCGGCGCCGCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //