Array 1 19956-18707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIB01000117.1 Escherichia coli strain K1506-c2 Contig_0000117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19955 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 19894 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 19833 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 19772 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 19711 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 19650 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 19589 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 19528 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 19467 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 19406 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 19345 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 19284 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 19223 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 19162 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 19101 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 19040 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18979 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 18918 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 18857 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 18796 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 18735 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCTGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22663-21780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIB01000008.1 Escherichia coli strain K1506-c2 Contig_0000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22662 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 22601 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 22540 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 22479 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 22418 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 22357 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 22296 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 22235 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 22174 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 22113 29 96.6 32 ............T................ GCGACCACGCAGAGCGGCGACAACCTGACGTT 22052 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 21991 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 21930 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 21869 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 21808 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //