Array 1 19079-18235 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBP01000019.1 Streptomyces sp. t39 Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 19078 29 93.1 32 ............A....A........... CGAAGCGCACGGCTATAGCTCGCCCTCAGAGA 19017 29 75.9 55 A............C..TA....G..G..T CGCATGGGGACGCCCTGCCGTCCGTGAAGGAGCGGAGCACCCCCGCGTCGGCGGG C [18997] 18932 29 100.0 32 ............................. GCCCTCGGCTACACGCGCCTCATCACGTACAC 18871 29 96.6 32 ..........T.................. CACGCCATGGCGGCCGGGCTGACGGCGAAGGT 18810 29 100.0 32 ............................. CCGACCGGGCTCCCGTGTTCATCCGTGCGCCG 18749 29 100.0 32 ............................. CCACCTGGAGCGGCTCGCCACCAACTCATCGT 18688 29 100.0 33 ............................. GCGGTCGAGTCGGTCGGGCAGCTGGTCGTCGCG 18626 29 100.0 32 ............................. GCGGACGCCCCGTGGAACCTCATCCAGTCGAT 18565 29 96.6 32 ..................T.......... TAGATCAGGTCACCGGGCTTGGCCTTCGTGAT 18504 29 82.8 29 .....................TGC.GG.. GCACGGGCTGACGGCGTGGTCATCGAGGC 18446 29 100.0 32 ............................. GTCTACGGAGGTGGGGCGCTCACCCTGTCCCG 18385 29 100.0 32 ............................. GAGACGCTCGGCGAGGTCGACACCGCGCTCGC 18324 29 100.0 32 ............................. AACGGTGGTGGCGCCGCGGTGACGCCCTGGCC 18263 29 89.7 0 ........T..............T....A | ========== ====== ====== ====== ============================= ======================================================= ================== 14 29 95.3 34 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : AGAGCCACATGCAACCCAATCCCTCGCGCCTGCCAGACGGCTACGGCAGCATCGAAACGCGATCGCTTGACACCTTGCTGTCACACCTGCAAAAGGGAATGGTCGTAAACTACCGATGCGTGGCCAACCCGGTTCGCAAACCACGAGCTACCACCCGGCAAGCTGACAGTCTCCCGCCAATCGTCGCCTTGAGCGGAAACGCCGCCATTGAATGGTGGGAACGTCAGTCCAACGCAAGCGGGTTGGAACCGCTGAACATCAACGCGCACCCGCTCGCCATGGTACGCGGCCGTCGAGGCTCCGAAGGCGCTGCGGCAGAGCAGCGAATCCAACATGCACGCACACAATTCGACGGAACAGCCAGAATCCTCGACGCCGAAATGCTTCGCGAAAAGCTCGCCAAAGGAATCGGACGGGGAAAGGCTTACGGATGCGGACTGCTCAGTATCGCTCCCGCTCGATGAGCTCACCGGCGGGCGCGCGGGAAACTCCGAGGAAGA # Right flank : CCGGGCACCACCAGTCCTGGCGACCGCGGTCGTCCTGCCTGCTGTGTCAGGACGACCACGACGAGTTCCTTCTGCTGCCGCTCGAGTGTCTGACTGCGCTTCTGGCGGTGCTGTCCGGGGTTACCGTGGTGACACGAGCTCAGTGCCTGTTTGGGGAGGACTCGATGAGTGACCAGCCGGCCCCTGCCGACACCGCCGCCCGGCAGCAGTTGACACCTGCTGCCGCCGAAGGCGTGCGCGCGTACGCGGCCCGGACCCGCGAGAGCGCCGACCAGCTCGCCGCTGTCCTGGAGGACATCGCCGCCAACGGCCTGCCCGCGGCAGAGGACTGCATACCGTGGGAAGAGCTGCGTGAGCAGCATCTCGCCCGGCTCGCCGCCCAGCGCCCGGCCGTCGCCTGATGCCCGCACCGCCCGGCCGGCGCCGGGCCCGGATCGCGTTCTCCGACTCCGCCGCCAAGCAGTTGGACGCCATCACCAGCGAAGCCGAACTGCACGCCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27585-34833 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBP01000019.1 Streptomyces sp. t39 Scaffold_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================== ================== 27585 33 78.8 28 ............AC..........C....CCGT CGACCTGGTCGCGGGCGGTGCCCCAGAC G [27602] 27647 33 90.9 28 ........................C....C..T CCCGTGCGGGCCTCGCGCCCTGGTCCTG 27708 33 90.9 28 .............C................C.G ACCAGGCCGTGGACCGCGGGCTCAACCA 27769 33 87.9 28 ............A....A...........C..T CCGCGTCGCTGACCTTCAAGGTCGCCGG 27830 33 90.9 27 .............................AC.A ACGAGGACATCGGGCGCGAGCGCGAGA 27890 33 81.8 28 ..T.......T..................CGGA GTTGGCGCGGCGCCCGGGCGGTCGGCTA 27951 33 90.9 26 ...A....................C......T. GGCATCGGCGACATAGCCCGGTTCTT CA [27980] 28012 33 84.8 28 .....................T..CC...T..G GGGGCTGGGCCGCGCTGAACCACGGCGG 28073 33 87.9 28 .............................CCGA TCAGATCCATCATCAGGTCTCAGACGGC 28134 33 87.9 27 ........................C....CC.T TGTCGCCCGTCTCTCCCCCGGCGCGGA 28194 33 93.9 28 .............................A..T CCACGATGTTGTTCGTCCCGGCCAGACC 28255 33 87.9 28 .............................CCTG GGTTGCCAACGGCGGCGGCATCGTCATG 28316 33 90.9 28 .............T................A.A TCTCAGGGAACACAGTTGTGCTCTTCAG 28377 33 90.9 29 ........................C....TG.. GACGGGCTGCCCAACCTGGTCGCGCTGTG 28439 33 81.8 28 ......G.....AT..........C....C..G ACGCCGACTTCGCGAAGAACCTCGCCAC 28500 33 84.8 28 ........................C....CGTG AGGATGCCCGGCCCGGCGATCTGATGTT 28561 33 87.9 24 ........................C.....GTG TGAGGAAGCCCCGGACCCGAACGG 28618 32 81.8 86 .........-...GA.........C....C..G CCGTACCAGTCGTGGCCGGCAGCGTACGGTCCTCACATCTGCCGGAGGATGCTCCGGCAGAGTGCCGGGTTTGCAGGTCCCAGCTG 28736 32 75.8 32 .....-......AG...A...C..C....T.G. AGAGTTTGTTGTCCGCGGACAACAAGCACGCC 28800 33 66.7 29 C...C..A.....T.A....A...C....CCAG CTGGGGCCGGATCCGTTAGACCATCTGAT 28862 33 84.8 28 .....T......AT...............AA.. GGGGCGACGGGGATGTGTATCTCGGCGC 28923 33 81.8 28 C............C...A......C....C.G. TCGAAGCGGCTGCCGCCAAGCGCGACAC 28984 33 87.9 28 ........................C....TG.T TGTTGTGGTACTGACTGGCCGAGCAGTC 29045 33 87.9 28 ........................C....TG.T CGACCTCCGCGCCCCCGGGGGCCTGGAG 29106 33 90.9 23 ........................C....C..A GACGCCGGCTCAACGCCCGTCTC 29162 33 87.9 28 ........................C....C.GT TGGAGGGCGGGGCGATCCTGTGCGGGGA 29223 33 87.9 28 ........................C....CG.T GACGGCAGCGCTCGGCCCGGGCGAGCGT 29284 33 93.9 28 ..............................CG. CGGCAGTGGCCATGCCGACCGACACACC 29345 33 90.9 28 .............................T.TT CGCGGGTGGTCTCGCCGGCCTGGGCGAC 29406 33 100.0 28 ................................. ACTGGGAGGGGACTCCCGTCCCGGCCTC 29467 33 100.0 25 ................................. TTGGGGCTCGTCCACTCGCGGTAGT TA [29496] 29527 33 87.9 28 .......................A.....CG.T CGCCTTCATGCTCGACATGCAGACGATC 29588 33 90.9 28 .............................CC.T TGTCGCCCGTCTCTCCCCCCGAGCCGAC 29649 33 93.9 28 ...............................AG CCCTCGCGTCCGGACTGGACCGGCCCTC 29710 33 100.0 29 ................................. CGGCCGAGCGGTGACATTGCGTTCGCGAG 29772 33 93.9 28 .............................A..T CGGTCATCTCGATCGCGGGCCGCATGAA 29833 33 93.9 28 .............................C..G CCGAGCACTTCGCCACCCTCGACCCGGC 29894 32 87.9 28 A.......-....................TA.. GCGGCGAGGACGGGCCGTCGATCCGGCA 29954 33 87.9 28 .................A...........C.GA TGGGCGGGGTGAACGACCCCGTGCCGCT 30015 33 87.9 28 .............................CGGA GAGGTTCGATCCGGACCCGATCACGGGG 30076 33 90.9 28 ..............................CAG TCAGCGCAGACACCGCCGGGTGGGCGAT 30137 33 93.9 28 ..............................C.G TCTGCAAGCCCGACCCCGACACCTTCTT 30198 33 87.9 28 ........................C....C.GG CCCGAGCCGAGAAGCTCGGCACGTTCTC 30259 33 87.9 28 ........................C....AA.G TCGTCCTGGCGCTCTTCTTCGGCGTCTT 30320 33 87.9 28 ........T....T..........A....A... CCGTGAGCGAGTACGAGCGGATCGTTCG 30381 32 84.8 28 .................-....A......TC.G GTGATCACCTCGCGGGTGCCGGGGTGGT 30441 33 81.8 28 ..............A.......C......TCGT GGGATCGCGCCCCGGGGCGGGTATCGGT 30502 33 87.9 28 ........................C....TG.G CAGCCCACGCCCGCACCTCCCGGCCGGC 30563 33 90.9 28 ..............T................GA GGACGATAGCTTCGGCGTCGTAGGCGGC 30624 33 93.9 28 ........................C.......G GTAGCTGGGGTGCTGGCATCCTCATCAC 30685 33 87.9 28 ........................A....AC.A TCCCGTCCACCAGCGTGTCGCGCACCAC 30746 33 87.9 28 ........................A....CCA. CGGGGTTGATGTTGTGCGTGAACTCTTG 30807 33 90.9 88 ........................C....C..G CCGTACCAGTCGTGGCCAGCGGCGTACGGTCCTCACATCTGCCGAAGGATGCTCCGACGCGGTGCCCCGGGGCGCAGGGACCCAGCTG 30928 32 69.7 27 .....-......AG...A..AC..C....ACG. AGAGTCTGTTGTCCGCGGACAACAAGC 30987 33 84.8 28 .C......................C....TC.A TTAGGTTGTCGAAAACGACGACCTCGGG 31048 33 84.8 28 .G...T.....A.T....A.............. TGGTCGCCTCCCTTGTCGACAGCGATCA 31109 33 90.9 28 ............AT................C.. CCGCCGACATAACCAGCGGGGGCCTTCT 31170 33 84.8 28 .......................AC....T.TA ACTTGGCCATAGGTTGCCCACGGACGGG 31231 33 81.8 28 .C...........C..........C....TC.A TTAGGTTGTCGAAAACGACGACCTCGGC G [31248] 31293 33 75.8 28 .G...T.....A.T..........C....TC.T TCTGGAGTGGGGTGTGGTGTGCTGGCGG 31354 33 90.9 28 ........................C....CC.. CGGTCCTTCTGGTCCGGGGGCTTCTCGC 31415 33 90.9 27 ........................C....CC.. CGGTCCTTCTGGTCCGGGGGCTTCTCG 31475 33 84.8 28 C.......................C.....AGG CTCATGCAGCACGACTTCGTTGCCATCG 31536 33 84.8 28 .............T...A......C....A..G CTGAGGAGGGCCGCCTCGCCCCGACCGG 31597 33 90.9 28 .............................TA.G CGGTGCAGGGCCTGCTCCGTGGGGACTC 31658 33 93.9 28 ..............................CA. CTGATGACCGACCAGAGCGAGACCGCCC 31719 33 97.0 28 .............................C... TGCGCGCGGAGCCGGTCGCCCAGCAGAT 31780 33 84.8 28 ...A.........................CAGA CAAGAACGGGATGTCGATGAACGACGTC 31841 33 87.9 28 ...A..........................AGA TCAACGCCCTCAACGACAAGAGCGGCGA 31902 33 90.9 28 ...A...........................TG ACGACCCGACGAGCCGGCCGCAGACGCC 31963 33 84.8 28 ...A.........................CCGG GCAGGGCGGTGATCGCCTCCGGAGGGAG 32024 33 87.9 28 .C............................AGA CGCCGTCCCCGTCGTAGGCCGACCGGCC 32085 33 87.9 28 .............................TAAA GGGGACACGGCCCCGTACTCGATGTCCT 32146 33 90.9 28 .............................TC.A GCTGGATTCGCGCGCACGCCAGGCCCGA 32207 33 97.0 28 .............................T... TCGCCGACCTCGCACGCGCCCAGAAGGG 32268 33 90.9 28 .............................AC.A ACGACGCCCGGGAGAGCATGATGACGGT 32329 33 87.9 28 .............................CCTT CAGCGCGCGCTCCAGCCGTAGGGCGGTG 32390 33 90.9 28 .............................CC.G GCTCCTGTCAGGCAGTCCTCAATGGCGC 32451 33 84.8 28 .................A...........CCAG GCGAGCAGGAGGATCAGTTCGCGCGATT 32512 33 90.9 28 .............................A.GG TCTCCCACGCGGTGAGAAAGACGGTGTC 32573 33 87.9 28 .............................CCGG TCGGTGAGGGTCATGAACTGCGCAGAGG 32634 33 84.8 28 ....................A.......T.CGG ACACCTTCGCCTTCGTTCGCTGGGGCTC 32695 33 87.9 28 .............................TCGG CGAGTTGCACCTGCCCGTTCGGTAGCAG 32756 33 93.9 28 .............................TG.. GGCGCCCGCTGCCGCCGTCGCGCGGGAC 32817 33 87.9 28 .............................TGTT GAGCGTCTAAATAAGCATGGCTTATGCC 32878 33 93.9 28 .............................T..T GGTTGGTGACGGGCGAGCTGCCGCTGTT 32939 33 84.8 28 ...T.........................TCGA GGTGGCGAACCTGTCGTTCGGTCAGCTC 33000 33 90.9 28 .............................CA.G GCTACATGCCCCTGGACATCGAGGTCAT 33061 33 93.9 28 .............................C..A CCGGCGGCTCGCTAACCACCTGGGGCTC 33122 33 93.9 28 .............................AC.. AGCCCTTCAGCGCCCGCTACTTCCTCGC 33183 33 87.9 28 ........................C....T.GG GCGGGATGTTGAACTGCTGGTTCGCGCC 33244 33 90.9 27 ........................C.....GG. GCTGGCCGCTCTGGGGGCCTGGATGGG C [33273] 33305 33 87.9 28 ........................C....CCA. GGGAACCGATTCCCAGCCGGCCCTCACC 33366 33 90.9 28 ........................C.....C.T GGGTCGCCGCGAAGCTGTCCGCTGCGCA 33427 33 100.0 28 ................................. ACTGGGAGGGGACTCCCGTCCCGGCCTC 33488 33 90.9 28 .............................CG.G GGGCGACGATGGGCAAGCGGTGGAACCT 33549 33 93.9 28 ..............................C.G ACGCCGGCTGCGACCAGCCCGCGATGAC 33610 33 97.0 26 ..............................A.. GGATCAACCGGCCTGACGAATCTCAT CA [33639] 33671 33 90.9 28 .............................AA.T CCAAGACCGGCATCCACGCTGTCGCCGA 33732 33 93.9 28 .............................C..G CCGAAATGGGCGACGAAGACCGCGCCGA 33793 33 90.9 28 .............................CGG. ACACCGGCGGGACGGCCGTCCCGCTCGG 33854 33 97.0 25 ..............................C.. GCAGGTCCTGCGGATCGTTCGACGT TCG [33883] 33915 33 93.9 28 .............................A..A ACGCGGATGGGCTGACCGGTGTGGGCAG 33976 33 90.9 28 .............................C.GT TCTGCGACCGGGCCGACCCCGTGCTCGT 34037 33 97.0 28 ................................A CCGAACACGTCATGCCGATTTTCACCGG 34098 33 97.0 26 ................................A GGGAAGGTGCAGACCCCTCCGTCGGG CA [34127] 34159 33 90.9 28 .............................CC.T CGTCCAGCCGGTGCATCAGCTTCGCCAA 34220 33 93.9 27 ........................C......T. GTGCGCGTCACGAATACGGATGCGCTG T [34249] 34281 33 90.9 28 ........................C.....C.A TCAAGGACGGGTACGCGATGGCCGTGCA 34342 33 93.9 26 ........................C.......G ACGACCCGGAGCTTTCCGGTGCTGGA TG [34371] 34403 33 87.9 13 ........................C....TC.T CCAGCGCGGCTTC Deletion [34449] 34449 33 72.7 28 .G.ACGTG................C....A.G. GGCTGCGGGGCGCGCGTCTGGCCTTCTG 34510 33 90.9 28 ........................C....C..A CCGAGAACTCGGTCTCCGTCACCCGGGA 34571 33 87.9 28 .............C..........C..T....T GGCTGGACAAGCAGGGGCACGCCCGGGC 34632 33 78.8 27 ......T......C..........C....ACGA CGCTGGCCTGCGCCGCTGCGCGCGGCT 34692 32 87.9 72 ................-.......C.T...C.. GCAGGGCGGCCGTGAGCGGGATTGCTCCGCCGGGCGGCGGATTGGAAACGATTGTTTCCAATGGCCCGCGCA TGGGA [34721] 34801 33 78.8 0 .....G.......T....A.....C...A..GT | ========== ====== ====== ====== ================================= ======================================================================================== ================== 117 33 88.9 29 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTCC # Left flank : GAATCCCATTGGCTCTCCAGCCGCCGGCAGACCGAGATGAACGCACGACCCTCTCGAGGGATGTGCCCTCGGCCTGAAGGCGCTTTGGAGAAACAGTGTCCCGATTCCTGCGGAAGTTCGTCCTGCGACGCGAGGTCCTTCTCGAGGTCTCCCGCGTGGTGGTCAGCGCGGTATTCCGTTCCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCACGGGTGACGGACCCTTATGGGTCCGTCACCTCTTTCGTCATGGCCACACTTCCAACCCAGGACACGAACTCGGGCCGGACCCCGAGCTCAGTCTTCGGAGCGTCAGCGCCACGACGTGGAAACCCACGAGTGCGGCCTTCAGCGCGGACCAGCTCACCGACTGGCCATCCTCCCCGCGGGGTGGTCCGACGATCTAGAGGCCGGGCCGGCGTGGCGTGCACGCCCCATCCGCCAACGTGAGGATGCTCCGATCATGGAACAGGACGGAGACCTGCCCGCGC # Right flank : TACGGGTTCGCGCCTAGCTTGATCATTAACGTCCGGCGTCGAATGTGCGGAGACGGACCGGTGAGCTCGCTATCCGTGCTGGTACTGGTGGGTGAAGCGCCACACCAGCCACCTCGCAGCACTTCGCCCCGCCGAGCTGACGCTCGGCGGGGCGAAGCAAGGGCCAAGTTGACCAACAGCTTCCCCTACATGGGTGCGGCCGTCGCTACTACGGTAGTTGTCGGTAAGTCACCAGGTTCCGGGGCGTGCGTACCAGGAGGGGATGGGTGAGTCGACGGTTCCGGACTCGTTGCCGTGGAAGGTGAAGACCTTGGTCTCGCCGGTTCCGTAGTTGTACGACACGGTGATGTCCGCCCGTCCGTCTCCGTTCACGTCTCCGGGCACGAGGTTGCCGGTGTTCGCCGCCACCCAGTGGCCGGCGGGGCGCGACCAGGGGGTGACGAAGCCGTCGAAGCCGCCGTCGGTGCGGGCGTGGAAGACCCTGAGGTCGAACGCGCCGT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.04, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [53-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //