Array 1 93974-88432 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJM01000011.1 Stenotrophomonas ginsengisoli strain DSM 24757 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 93973 32 100.0 34 ................................ TTGGGCATTGCCGACCGTTGCGATTGTGCTCTGC 93907 32 100.0 35 ................................ TCGCTGGAGATGACCGACTCGGCCATCTACAACCG 93840 32 100.0 33 ................................ CATGCTCGTCGCAAGGCGCGCAGGAAGATCACA 93775 32 100.0 34 ................................ CCGTTCGATGCGGCGTTTGCCACCGATGCGGCGA 93709 32 100.0 35 ................................ TACAGTTCCACCGCTACCTGAGGCCCGCACATGCA 93642 32 100.0 33 ................................ CACCAGGGGCCAGCCCAGGTTACCGCCGATGGA 93577 32 100.0 34 ................................ GTCCCTGGTGCAGCAGTGCGCCACGGAAATCTAT 93511 32 100.0 35 ................................ CTGTTCGAGGCCGTGGGCCGCGATGCGGTGGTGGA 93444 32 100.0 33 ................................ ATGCCAGGCCCCCCGCGTATGCGGTCATGTGTC 93379 32 100.0 34 ................................ TGGATGCTGACGGTGGTGCCGCCCTGGCCGCCAA 93313 32 100.0 35 ................................ ATCGACATACAGGCCGCAATTGCCTTGCTCTTTCA 93246 32 100.0 35 ................................ GGCCCAATGCTGCGACACAGATAAGGCAAGCCATG 93179 32 100.0 34 ................................ CAGCAACTGGCCGTTGAGCTGCTGGAGCATGTAG 93113 32 100.0 34 ................................ CAGTCCATGACGCTGACGGTGGGTTCGTTCCAGA 93047 32 100.0 33 ................................ TGGAAGCCGTCCACCGAAATGCCGGCCTCGGTC 92982 32 100.0 36 ................................ AAGACCATGGTTGTAAATGGCCAAGCGCTGCTGCAG 92914 32 100.0 34 ................................ TTTGACGATCAGGCCCGCAACCTGTTCCTGGGCC 92848 32 100.0 36 ................................ CGTTTCCAAGTGCACACGCCACAAACGTTGCGCCAG 92780 32 100.0 34 ................................ ATGCCAGGCCCCCCACGTACGCCGTCATATAGCC 92714 32 100.0 34 ................................ AGCGCATACCCGCCGTCCTTGTCCCAGCCGCTGG 92648 32 100.0 35 ................................ GCTTTTCCTGTTTGCCCGTAGGTCGTTTGTGGTGT 92581 32 100.0 36 ................................ ATGGCCAACGCACGTCAGGCCAAGGTGGATTGCAAG 92513 32 100.0 33 ................................ TGCTGCCGTGATCCCCATGCGCTTGGCCAGCGC 92448 32 100.0 34 ................................ TCTATCACCCTTCGACTGATGACGGCCTGACATG 92382 32 100.0 34 ................................ TCATAGTGTCGCTCCAGGGTAAGGGCCTGCTCTA 92316 32 100.0 34 ................................ CACGACGTGGCCAAGGCCTACATGGATGCCGACG 92250 32 100.0 34 ................................ TTCGATGAGTACATGAAGCTCTACGGGGAATATG 92184 32 100.0 33 ................................ AGCGTGACCGTGCCGCTGATGATCGTGCCGGTG 92119 32 100.0 34 ................................ TGCACCGAAGAGCTGAAGACCCTGCCGATCACGC 92053 32 100.0 34 ................................ ACGGCTGCCCAGTCCTCGCTGTTGTCTGCCGGCC 91987 32 100.0 34 ................................ CTTGCGCACGCGGAAATACGGCAGCCCGGTGCGC 91921 32 100.0 33 ................................ TGCAGTAAGCCGAGACATAGACGCATGACCAAG 91856 32 100.0 34 ................................ TTCGCAGTGGCCGACGCCATCACCGGCACCCCAG 91790 32 100.0 34 ................................ GCTGGCATGGTGATGCGGCAGCTCAAGCCTGGCA 91724 32 100.0 35 ................................ TATGACCACCCGATCAGCGAGGAGGGCGCGATAAG 91657 32 100.0 35 ................................ ATCCATACCGCGCCGCCCTGGCGTTCCGTGCTGAA 91590 32 100.0 34 ................................ CCGTGAAACATCAACCACGCGCCCGGCTGTGCCG 91524 32 100.0 35 ................................ TTAAAAGAGCTTGCCTGTAATTCTGCCGGCTTGGC 91457 32 100.0 35 ................................ ATGTATGGCCCATCTACGCGCGACCGCGCCGCCAT 91390 32 100.0 35 ................................ AGGGAGGACTCCGCCTGCCAGTTAGCCACCACAGC 91323 32 100.0 36 ................................ AACCTGTATCGCGACAACCGCAACCTGGGTCTGATG 91255 32 100.0 35 ................................ CAACACCAGCGCGCACCGAAGCGGTGAGGCGGTGG 91188 32 100.0 36 ................................ GCTTATTCCGATACTCGAGCCGAACTTCGTCCAGCC 91120 32 100.0 34 ................................ CTGACCCTCGAGCTGGTTTACCACGGCACCACCG 91054 32 100.0 34 ................................ GAGTGGGCGGACACCTACCTCGGCCAGATCTGGC 90988 32 100.0 33 ................................ ATCGTTTCTGGCCCGATCTGGCGGGCTAGGCCC 90923 32 100.0 34 ................................ TCGCAGGATGATAGCAACGTCTGCTGCGGTCATC 90857 32 100.0 34 ................................ TCTGGATGGCGGGCAGACTTGGATTGATAGCCAG 90791 32 100.0 35 ................................ ATGCCGGTACTGTGCGAGCACGCAGCTCCCGTCGA 90724 32 100.0 34 ................................ AGGACTGCGAAGCGACCCACGGTCACACCGTCAG 90658 32 100.0 35 ................................ TGGCAATCCCGCCACAATCTGCGCAGCGCCCCGGC 90591 32 100.0 35 ................................ GACCGACAGGCCCAGTGCGGCAGCCAAGGTGCCGG 90524 32 100.0 34 ................................ TCGAACTGGCCTTCGCTGTTGACGATGCTCATGT 90458 32 100.0 34 ................................ CGCCACGCGCCGGCCGACAAGGCCGATCGGCTGA 90392 32 100.0 36 ................................ ATCGTTGCGGCTTGGGAACAGGCCGCAGCTGCGAAC 90324 32 100.0 32 ................................ TGCACTGCTGCCCAAGCCAATCTACCTGACCT 90260 32 100.0 34 ................................ AATATATGCGGCCGCATCCGCTTTGGCTTTGGCT 90194 32 100.0 37 ................................ AGCTCATCGCCAAACGACAGCACCGGAAGCTCGGGGA 90125 32 100.0 34 ................................ TTGTAGCCGATGCCATCGCGCAGCAGGCCCTTGA 90059 32 100.0 33 ................................ TTATATATGAGGACACCCTGATGGCTGCAGCAA 89994 32 100.0 35 ................................ ATTATTTAAGCCCCAAGCATTGCGCCGCGTAGGCC 89927 32 96.9 34 ....T........................... CTGGTATCCGCACGGCATGTTGTCGATGGTTTTG 89861 32 100.0 35 ................................ CAGTTCGGCGTCCTCGGCGGCCTTCTTCGCGGCTT 89794 32 100.0 34 ................................ TCCACCGTGGTGGCGATGTTCAGGCGCGCCTGAG 89728 32 100.0 34 ................................ ATAGGTGCGACGGGCGCCGATGCGCACGGCCATG 89662 32 100.0 35 ................................ ATGAACTTGCGCGCATCAAGCGCCTGCGCCTCGGT 89595 32 100.0 35 ................................ TGCTACCCGCCGGCGGTGATGCAGGCGCTGCAGTG 89528 32 100.0 33 ................................ TTCGACGCCAAGTTGCCTATCGGACAGCTGCGC 89463 32 100.0 35 ................................ TTGACCACGCCCTGCTGCGGGAAGCTGCCGCGCAT 89396 32 100.0 34 ................................ AGGGCGAGGAGTTCCTACTGGACGCTGGCGCCCG 89330 32 100.0 35 ................................ TGAGCACCACCACGATCATCACCGAGCATGGCGCG 89263 32 100.0 34 ................................ CGGTATCCGATTGCAGGACGACGTTTGCCGCCTT 89197 32 100.0 34 ................................ GATTTCCTGGTGTGGAACGACGTCCTGAGTCGCT 89131 32 100.0 34 ................................ CAGATGTGCGACAGAAGGGACTTCTCCCGGTTTG 89065 32 100.0 34 ................................ CCGTGGTGGAGCGGTGACCGCTCGGCTGAGGAGA 88999 32 100.0 35 ................................ CGCTACCTCATCGGCCGGCCAGCCTGACATGAAGG 88932 32 96.9 35 .G.............................. TTCATTACCTGCGACGTGACGCGCCAGCGCGTGGT 88865 32 100.0 36 ................................ ACTTGCCGGCCTTGCCGCTGATGGACTTCTGCGGAA 88797 32 100.0 36 ................................ ACGATTCAGCATTTTGACCACCCAGGCGCGCGGCGG 88729 32 100.0 34 ................................ TGCAGCCAGGCAGTCAGCTCATAGGTGTCTGAGT 88663 32 100.0 35 ................................ GACCAGCGCAACATGGTTACCCTCAATCCCACGCA 88596 32 100.0 34 ................................ TTCTGCCGGGTGCTGGTGCTGTACTGCTCGACCG 88530 32 100.0 35 ................................ TGCATGGCGATGCGGTCGGCCTGCTCACGCGCTAA 88463 32 84.4 0 .....................CAAC....C.. | ========== ====== ====== ====== ================================ ===================================== ================== 84 32 99.7 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : ACCATTCCTGTGGAAATGACCTGGAGACTGCACCATGATGGTTCTGGTCACCTACGACGTCAGCACGTCATCTGCCGGCGGCAGCAAGCGTCTTCGCCAGGTGGCAAAGGCATGCCGGGATCTGGGCCAGCGCGTGCAATACTCCGTGTTCGAGATCGAGGTCGATCCCGCCCAGTGGGTCGAATTGCGCCAACGTTTGTGCGACTTGATTGATCCTACGGTAGACAGCCTGCGGTTCTATCAGCTTGGGTCCCGTTGGGAAGGCCATGTCGAACACATCGGCGCCAAGCCTGTCCTCGACATGAAAGGCCCCCTCATCTTCTGACGCGAACCCCAAGCGACCGCCGTCTTTGCGGGAGGTTCGCACTTTTCCAACAGATTGATTTCAAATCGAAAGTTGTCCCTTCCCGCCATGTAGGCCTGTGGCTTCCACGCGGCACGGTCGCATTCGCGAAATTCAGCTGATTGGCTCAACAGTACCAAGCAGTTATCTTCATGGA # Right flank : CGTTATCACTGGGTAAGGGAACTCACCAATCGTTGGGCATGAGCCTCGCGGCCAGCCGCAAGAAACAACAACGCCGGCCTTTGCCGGCGTCGTTGATTACAGCGTTGCACCGCATAAACGGGGGAGGGCTTATTCCACCGTCACGCTCTTGGCCAGGTTGCGCGGCTTGTCCACGTCGGTGCCACGGGCCAGGGCCGCGTGGTAAGCCAGCATCTGCACCGGAATGGTGTGCACGATCGGGCTGAGCACGCCGACATTGCGCGGGGTGCGGATCACATGCACGCCTTCGGAGGCGCTGAAATTGCTGTCCTGGTCGGCGAACACGAACAGCTCGCCACCACGCGCACGCACTTCCTGCATGTTGGATTTGACCTTCTCCAGCAGGCTGTCGTTGGGAGCGATCACCACCACCGGCATCGCCTCGTCCACCAGGGCCAGGGGGCCGTGCTTGAGCTCGCCGGCCGGGTAGGCCTCGGCGTGGATGTAGGTGATTTCCTTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //