Array 1 702793-697907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065311.1 Bifidobacterium animalis strain YL2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 702792 29 100.0 32 ............................. TATCGTCACACCAGCCGCCTTCATGGCCTTGC 702731 29 100.0 32 ............................. TAGCGTACGGGTGCCACGTATTTGTTCCAGTT 702670 29 100.0 32 ............................. CGCATCGCGTACCCGCCGCGGCCGGTGCCGGA 702609 29 100.0 32 ............................. ATATAGTCGGCCTTCGCCCAATCATCGGACAA 702548 29 100.0 32 ............................. TCATCATCGACCATCTGCTGCTGATGACACAG 702487 29 100.0 32 ............................. GACATCGACGCGCTGATGGACGTGATCAACGC 702426 29 100.0 32 ............................. ATTCATTTCAAGACCGGCTATTCGATTCGACT 702365 29 100.0 32 ............................. GTCTGTGGCGGGAAATTGGTGTCTGCCATGGC 702304 29 100.0 32 ............................. TGCCTTACGCAGGTTGGAGCGGCTGATCGAGA 702243 29 100.0 32 ............................. CATGAGCACACCCACATTGACCGTCATCGGAC 702182 29 96.6 35 ...................A......... AAGAGCGTCGACCTCGCCGTGCTCGGCGGCAAGTT 702118 29 96.6 32 ............................A GTGTCGTGTCAGCCGCCACGGTGAGTGATTGC 702057 29 96.6 32 ............................C TCATGATCTCGTCGACGAGCTTGCCTCCGTCG 701996 29 100.0 32 ............................. TTCGGCGTGGGGACTGAAATTCCATCTATTCG 701935 29 100.0 32 ............................. CCGCGAGGTGATGGCGGTCAGGTCGACGCTTG 701874 29 100.0 32 ............................. ACCATCTACCACCCGCTGACCTTCGACCACTA 701813 29 100.0 32 ............................. CCTGTGACACCAGCTGTTCGGTGTACCCGTGA 701752 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 701691 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 701630 29 100.0 32 ............................. AACAAGGAGATCATCATGGCCGCGACCAACCG 701569 29 100.0 32 ............................. CCGAGGCACAGTTCGGTGCCGGGCTCAGGCAT 701508 29 100.0 32 ............................. ATAAGAAGTATGACCCGCTCGTCTCCGTGGAC 701447 29 100.0 32 ............................. ACATTCATCGCCGGCACGATTCCGCTGCCCGG 701386 29 100.0 32 ............................. ACCGCAGTACAACCTCCGCTCGGCATCCAGCG 701325 29 100.0 32 ............................. ATGTCGCCATTGTTGACGGAGGAAGACAGGTA 701264 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 701203 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 701142 29 100.0 32 ............................. GTCGCCACCACGCGGTTCGGTCGGTTCATCTC 701081 29 100.0 32 ............................. GCAAGCGACAGGACGCCAATATGCTCGGATAC 701020 29 100.0 32 ............................. TCAGTGGTGGTCAGGATGGCTTGCACGCCCTT 700959 29 100.0 32 ............................. CGGGTATGGACTCACAGCAACCAACACGGTCA 700898 29 100.0 32 ............................. GTCGGCATGGCCGTCGGCGCCATGAGCACCGC 700837 29 100.0 32 ............................. AGCTGCGAGTCCGGCATTTCCCCGAGCATGGC 700776 29 96.6 32 ............................C GCCCACCTCACACTCGGCGAGCGTGCCGAGGA 700715 29 100.0 32 ............................. CTCACCGATGTCAGCGGAGAGCCTTTCGTCGA 700654 29 100.0 32 ............................. ACGAAAACAACCACCTCGCAATAACATACCCA 700593 29 100.0 32 ............................. GGCGACTTGCCCAGCTTCTGGCCGCCCACAAT 700532 29 100.0 32 ............................. TTTGCGAGCTCGGAATCCAATGTAGCCCATGA 700471 29 100.0 32 ............................. CTCGCCACCAAACCCCCGGTGATATCGTCGCT 700410 29 100.0 42 ............................. GTCGCATCGAAGACCACTGACGGCACATGGGCCGAGACGGGC 700339 29 100.0 32 ............................. CGGTCCACGTCCGCGTCGCCGCCCAGGATCGC 700278 29 100.0 32 ............................. CAGAACGAACACGTCCTGTACACCAGAGACGA 700217 29 100.0 32 ............................. AACGGGAAGTACGTGGATTTCGTCAAGATCGC 700156 29 100.0 32 ............................. GGAGAGCATTCATGGCTGACGCATATGGGCCG 700095 29 100.0 32 ............................. AAGAAGGACGCAACAAAGGCTGCTTGACGGCC 700034 29 100.0 32 ............................. GCACCTGGCACTTCAAACGATATCTGGGAGTC 699973 29 100.0 32 ............................. GCTTGGAAACAGGCCGGTCTACAGGTATGCGG 699912 29 100.0 32 ............................. TCTGTGTCATACTTGAGTCATCAAGCAAACAA 699851 29 100.0 32 ............................. CCCCGAGCGCCAGAATGAGACGATGCCCCGCT 699790 29 100.0 32 ............................. TCCCAAGCGTCGTCGCTTGTGATCGGCCTGCC 699729 29 100.0 32 ............................. GGACTCGTCCTGTTCGCCCACGTCACATGCGC 699668 29 100.0 32 ............................. AGCCAAGACGGCGATACCGGGGACCGTGGCCA 699607 29 100.0 32 ............................. GAGCGAGCCATGAGCGCGTCGAACCAGACACC 699546 29 100.0 32 ............................. CATTCTTGCCTGCTGCGATGCGCCGCCTATGC 699485 29 100.0 32 ............................. CACTGCGCAGCCAGCAGATAGGTGTCATTGGC 699424 29 100.0 32 ............................. CGGGAGACCGCCAGCATTTCGATGAGCTTCAG 699363 29 100.0 32 ............................. AATGATTGGCATTCCGACATCGCCCGACTGAA 699302 29 100.0 32 ............................. CTGGGTAGGCTATGGCTGGTGACACCTGATGG 699241 29 100.0 32 ............................. TTGCGCCACATACGAGTCGGAATACAGGTCTT 699180 29 100.0 32 ............................. ATGCCGACGCCAGTCCATTTGCCCTCATAGGA 699119 29 96.6 32 ............................C CGACAACTCACCAAACACTGCAACAGCCACAT 699058 29 100.0 32 ............................. TGGGCGTCAGATAGTCCGTCAGACCTGCTCCT 698997 29 100.0 31 ............................. GTGTGTGATGGCGACGAACATCAGCCAGAAG 698937 29 100.0 32 ............................. CACACGCTGACGATGGCGCAAGCGATGTTGAT 698876 29 100.0 32 ............................. GCACGTGAAGCCCGCGAGAAAGCGGCAGTCAA 698815 29 100.0 33 ............................. GGAAGTGAACAATGCCGGACAAGATTCAGCAAT 698753 29 100.0 32 ............................. ACGTGGAGCGTGGACAGGGACGGCAGGGCGAA 698692 29 100.0 32 ............................. GAACTGTGGGTGAACCGCACGCGTTCCACGCA 698631 29 100.0 32 ............................. GCAATGAACTTTCGAACTCGTCGAACAGGATG 698570 29 100.0 32 ............................. GCGACCAGCCAACCGCGCGCATCGCATACGCG 698509 29 100.0 32 ............................. AGAGATCGTAAGGCTCCAGCAACGTGTGCGTG 698448 29 100.0 32 ............................. GATCGCGGAAAGCGCGCGGGGCATGCTCGGGT 698387 29 100.0 32 ............................. CATTGCAAAGAATGTTGGGCCATAAGAGCGCG 698326 29 100.0 32 ............................. GTCGCGGATCATGTGTGCCCGGATTGCATGCA 698265 29 100.0 32 ............................. AACCATACGAGCGCGCCAACGACCGCTGCGAT 698204 29 100.0 32 ............................. TATCAAAAACCGTTGGAATCAAGCCGTTCTAT 698143 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 698081 29 89.7 118 ..........T.....A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTATCACACCTAATCACGGTGATTG 697934 28 82.8 0 .......T........T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 79 29 99.4 33 GTTTGCCCCGCACAAGCGGGGATGATCCG # Left flank : TTCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCAAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGCGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGAC # Right flank : GAGTGGTTCCGGCTAGCCTTAGATGCCGGAACCACTTCGTCCAATCCTACCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACAACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGCGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //