Array 1 21-372 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LEKU01000002.1 Riemerella anatipestifer strain NJ-1 NODE_2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                                                                   	Insertion/Deletion
==========	======	======	======	====================================	==================================================================================	==================
        21	    36	 100.0	    30	....................................	TTCTTAATAAGAGCCTATAAAGAAATGGAA                                                    	
        87	    36	 100.0	    30	....................................	GATAGATAAGGGCTTTATTTGGGACGGTGC                                                    	
       153	    36	  72.2	    82	...................TGTTAT...T..A.G.A	TTCCGCTGAAACTATCAACAAAGCTGTGAGCTAACATGAGAGCAGTCCCAACTGATAGTGCTAAAGTTTACAGCTCGAGTAA	
       271	    36	  97.2	    30	..........................T.........	GAATGGTAAGTAATAAGTTACTTCGTAAAT                                                    	
       337	    35	  72.2	     0	................-.....T.T...T.ATTGTT	|                                                                                 	C [359]
==========	======	======	======	====================================	==================================================================================	==================
         5	    36	  88.3	    43	GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC	                                                                                  	       

# Left flank :   ATGTTTTTATGGATTTCGTTG
# Right flank :  TATGATAGGGTATTGTCTTTTTTTGGGTGCTTGTTTTATTTCGGTGTTTCAAAGAACGCTTTTCTCTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCACCTCGGTGCTATTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGCTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAACAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTC

# Questionable array : NO	 Score: 4.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-1.12, 8:0.8, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.06%AT]
# 	Reference repeat match prediction:         F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.64   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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