Array 1 70249-71796 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPF01000005.1 Listeria booriae strain NCTC13936, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 70249 30 100.0 37 .............................. AGAAGAAACAATGAAAAAAGCTTCTGATGATTTATCA 70316 30 100.0 38 .............................. TGGGAAAAGTAACGGATGAACAATTAGCGCTGTTATGT 70384 30 100.0 36 .............................. CAATTTGAACCAGGTCTTTATCTTCTCTATCGAAAT 70450 30 100.0 36 .............................. AGTAAAACAGGATTCAATCCTAATAAACTCAATCCA 70516 30 100.0 37 .............................. AAGCTCCAGTGCTAGTTAGGTATGTACGGATTGACAG 70583 30 100.0 36 .............................. TGAAATTAATGCGTATCTTGAACAAAATGGGAGCTT 70649 30 100.0 35 .............................. TCTATTGTTCAGCGTGGATATATCTTTATAGCCAC 70714 30 100.0 35 .............................. ATATCTAAAATGGATAAGTTGCTTCTCTTCATCGT 70779 30 100.0 36 .............................. TTTGATGCATCGGAAACATACTTAAGCCAAGTTGAA 70845 30 100.0 36 .............................. GTTATTATAATGCGAACGTTCGTTCTAAACCTCTCA 70911 30 100.0 36 .............................. GCTTCACCTTGTCGCGGTTCTTCCGTCCGAATTTAC 70977 30 100.0 36 .............................. AATGAAGACACATTGAAAGAGCTTTATAAAGGTGCT 71043 30 100.0 35 .............................. AAATCTGAAAACAAAAATTACGAATTAGGAACAAG 71108 30 100.0 38 .............................. CCGCTTTATGTCTTCCAACTTTTCATAATCCAAGATGG 71176 30 100.0 37 .............................. AAATATGGCGGTTTGAAATAGAAACCGATGCCGTCAA 71243 30 100.0 36 .............................. AGGGACATACCTGTTATAGCACCAACGCTATTCACC 71309 30 100.0 35 .............................. TTGGATATGAGTTAGGAGGAATTTACATGATAGGG 71374 30 100.0 36 .............................. GCGTTTACGGCGCTACAAGAGCAAAAAATAAACAAT 71440 30 96.7 37 ....................A......... TTTCAAATGTGGTACACCTGTTGGATTGACAGTCGCA 71507 30 93.3 36 ................A...A......... CGATTAAATGATTGTGTATGACCTAAAAACTTGATC 71573 30 96.7 34 ....................A......... ATGAAGAAAGCAGATAGCAGGCCTTCCGTTTGCG 71637 30 100.0 36 .............................. AAAAAAAGAAGAGTCAATTGCTCTTCTAGGTTTTGC 71703 30 96.7 34 ...............T.............. TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 71767 30 83.3 0 ....................G..CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.6 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAGATCCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTGTGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCTGAAAAAACGGATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 75044-75799 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPF01000005.1 Listeria booriae strain NCTC13936, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 75044 30 100.0 35 .............................. ACACGACGTGAATACATCTCAAATTATACAGCTAG 75109 30 100.0 36 .............................. TATGGAGAGGGAGATTATAAGATTGCTTTTCGTGCG 75175 30 100.0 38 .............................. CAGGGTGAAGTGCTTACTTTTGTTACAGGTCGTTACGA 75243 30 100.0 36 .............................. AAGGTAAAATCTCCGCAATGATAAACGACGTCATCG 75309 30 100.0 34 .............................. TTCGAATTAATGACGCTGGTAAACCGTACTCTGA 75373 30 100.0 37 .............................. ATCGTGTTTAAACACTTCAAAGTCATAAAATATCATC 75440 30 100.0 35 .............................. ATTTGCTGGATGGATGATGGTTGATTATCTAGGTC 75505 30 100.0 36 .............................. CAACGAATACTAAAAAGTGAATCATTGTTAGCCCTT 75571 30 100.0 37 .............................. TAACCACCTCCTCCAACTTCTGCGCGTTGAGGATTTA 75638 30 100.0 36 .............................. ATAAACGGGCTGACATTTTTAGCAGTGTTAAATTCA 75704 30 96.7 36 .............C................ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 75770 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGATGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCATTGCAACATGAAATGAGCAGTTTTGAAGTGTTGGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATAATTGTGCAAAACGGGAAGAAAAATATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGAGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTTTTCAGTATTAATGGATATTAACCCTCTTAATCTATTGGCCTATCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAGGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGGCCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGCGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 963906-963025 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPF01000002.1 Listeria booriae strain NCTC13936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 963905 30 100.0 34 .............................. GGCTATCAAGAAGACGGGAACCATCCCGAAAAAA 963841 30 100.0 35 .............................. CCAATCATTGGACAACTCCTAACACTTGCATCTTA 963776 30 100.0 34 .............................. TTCTACGCATATTGTCATTTAGCATCATTGCAAA 963712 30 100.0 36 .............................. TGGAGTTGCTGTATGATGCTGAAGGCGATGCCATAC 963646 30 100.0 36 .............................. ATCGAAAGATTGTAATTCAGCTAACGTTAGAAACGA 963580 30 100.0 36 .............................. TAAGAAAATAAAGTACACAAGTGTAAATGTGTACTT 963514 30 100.0 37 .............................. GTTTCTGGATTGATTCCTAAATACATTTTGAATAACC 963447 30 100.0 34 .............................. CAATTACAATCGTTCCACATGCGGTACCTATCGC 963383 30 100.0 35 .............................. CGTCATTACAAAAAGCCGTCAATTCAAGTCGAAAA 963318 30 100.0 36 .............................. ATTGCTTCGCCGGTCTTGCTTTCAAGTGCAATTTTA 963252 30 100.0 36 .............................. AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 963186 30 96.7 36 .............C................ TTTTCAAATGTTGCTTGAGTGCCTAGCTTCGGATTA 963120 30 93.3 35 ........T........T............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG A [963102] 963054 30 76.7 0 .................A....TCCAG.C. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 97.6 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGATGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGGCTATTTTTGGAGGTTGGGTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : AGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCAATCAACAATCCATAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGATCTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGGGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 232921-231917 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPF01000001.1 Listeria booriae strain NCTC13936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 232920 30 100.0 34 .............................. ATTGTTAGCATATCTTGTTTTAATTCAAATAAAG 232856 30 100.0 36 .............................. CAGGATAAAATTGCGGGGGATGAAGAACTCAAAATA 232790 30 100.0 36 .............................. TACTGTAAAAGTAACACTAGGTAAAGTTAGTACCTC 232724 30 100.0 36 .............................. TCGTCTGAACCTATCATTTAAGCGTCATATAACAAG 232658 30 100.0 35 .............................. CGTTGTAACCATGCCAATAACTCATAAATATCATT 232593 30 100.0 36 .............................. ATGCTCCAATACTTCTTTTCTAGCAAACTGGAAGCC 232527 30 100.0 35 .............................. CCACGCTTTCATTTCAGCGCCGCAGCTGGGGCAGA 232462 30 100.0 35 .............................. ACTTCAAATTTAGGCTTAACGGTATAATTACCCAT 232397 30 100.0 35 .............................. TCCTCATATAGGACAAGGCCCCCGACGGTACTACC 232332 30 100.0 35 .............................. CAAGGCGCTATCGTCAATTATATGGGCGCAGGGAA 232267 30 100.0 36 .............................. TTTTACGCGATGTTCTGCTAGCTCGTCCTTAACTTC 232201 30 100.0 36 .............................. ACAAGTGTTGCTGGATTAGTCTTTTGCTATCCCGTT 232135 30 96.7 36 ....C......................... TTCGTTCATCGCTCGAGCAATGTTTTCATGGTATAC 232069 30 100.0 35 .............................. TGCCAAGATCGCCAATTTTTGATTTTGTGTTATTA A [232053] 232003 30 90.0 27 .............C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [231947] 231946 30 73.3 0 .C....CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 97.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTACGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCCATTTAGCTACGACTGCTTTGGCAGACAATCTCTCGGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCTAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAATGAAGTAGCCTCTCGTTGCAACAATTCCTGTGCTGCTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //