Array 1 265377-266258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCS01000002.1 Salmonella enterica strain BCW_6062 NODE_2_length_446496_cov_5.08056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265377 29 100.0 32 ............................. TTTAAATTAATCGCAAAGACAGTTTTACTAAT 265438 29 100.0 32 ............................. CCCTACCGGGCAGGGGTTATTACAACCATTTC 265499 29 100.0 32 ............................. CTGTCGGGGATTAGCTCCCAGGCGTAGGCGCA 265560 29 100.0 32 ............................. AAAATAAACAGGAATCGTGGGCTGAATCCGGC 265621 29 100.0 32 ............................. TATTTTTTTTCAACTGGCTAAATTTTGTTGTC 265682 29 100.0 32 ............................. GAAATCGGCTATCTTTGTGCTGCCCGTATCGG 265743 29 100.0 32 ............................. ATACCGCCTCTTACATTGGCGCCGTATCAAAA 265804 29 100.0 32 ............................. GAATTGCTCGCGCATGTCCGGCAAAAATCCAG 265865 29 100.0 32 ............................. GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 265926 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 265987 29 100.0 32 ............................. ATTAAACGCCCCATCACCATTAGGCTTGGGGT 266048 29 100.0 32 ............................. GTAAACCGTGTGCTGACAGGTCATAAACTCAC 266109 29 100.0 32 ............................. GTTACGCAGCCATTGAGGTGCAAACGGATCAA 266170 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 266231 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGCGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCTATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 282505-283633 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCS01000002.1 Salmonella enterica strain BCW_6062 NODE_2_length_446496_cov_5.08056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 282505 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 282566 29 100.0 32 ............................. CGTTTAAAGACGGCCTGGCAAACAGCAATTTC 282627 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 282688 29 100.0 32 ............................. CCAGATAGCGGTCTTTTCTGAATCTGGCGTAT 282749 29 100.0 33 ............................. AAACCGAACGATTTACCCAAATGCCCCACCTGC 282811 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 282872 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 282933 29 100.0 32 ............................. CCGCCTGGCACTGGCTATAGGAATTAAACCGT 282994 29 100.0 32 ............................. CGCAGCTATCCCCCATCATAGAACGCTAATCC 283055 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 283116 29 100.0 32 ............................. GGTGAATCTTTCCAGCGTCGCCCTCAGCACGC 283177 29 100.0 32 ............................. CGTAACGCTTTCGAAAATAACCCGCAGCGCCC 283238 29 100.0 32 ............................. GCATCCCTTTACACGCCGTATTCTCATAGCAG 283299 29 100.0 32 ............................. GCATTGCTGCAATCACCTCAACCGGCGATCCA 283360 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 283421 29 100.0 32 ............................. CGGGCAAATGCCCGCTTTCTTGTTTCTATCAG 283482 29 100.0 32 ............................. CCAAAACTGAAATGACCAGTTACGTTGATCAT 283543 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 283604 29 96.6 0 ........T.................... | A [283631] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //