Array 1 16927-16719 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041297.1 Acinetobacter indicus strain 80-1-2 plasmid p80-1-2-tetX3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16926 28 96.4 32 .............T.............. TTCAAACGGCATTTATCAAATGCCAAGATACG 16866 28 96.4 32 .............T.............. TCTAAGAGAATAAAATTCCTTCATGGAAATCT 16806 28 100.0 32 ............................ TTGACTGGAGTAATCCAAGATTTCCATGTATC 16746 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTGAGTAATCGCACAGGCGATTTTTAGG # Left flank : GTGAAATAGACTTTTCCGACATTCCTGAACTTGATGAAAGCTTTTGGAAAAATGCTGTCCAAAATCCGTTTTATAAGCCAACTAAACAAGTGACTACAGTACGCATTGATGCAGATGTCATGCAATGGCTAAAAGCACAAGGCAAAGGCTATCAGACACGTATGAATAAGATTTTACGTGATGCAATGCTGAATGATTTAAAAAATCACCCATAAAAAACGGAGCTTAAGCTCCGTTTTTTACAAACTATTTTTAAGCTTATAGAATCTAAATTCGGGGTAAATTAAACGGCTTTGTTGCACAAAGATTTCATAACTATATGATTTTAAAGGTTTTGATTATTTTTTAATCCAAAATTAAATTTATTTAAATCAGATGCTTACATATTTATGCAACAAAGCCGAATATAATTAATTTTATTTCCATAAATAGTTTTTTGTTCTTTTTACAAAAATGTTATAAGATCATGATTAACTAAGATATATACTCTTAATATTGTT # Right flank : AGGATGTTGGCTATTTAAACTATACCTCTACTTTTAACTTCGGTTATTTATGGGAGGATTACCTAGAATGGAAGTTAATCCCCCATTCTTTAATTCAATTTTCTCTGAATAACAACTCGATTTCGTCCCATTGAGGTAATGTATGCTTTTTAGGTACGACTTCGAACTGTAAGTCGACACAACTCAGTACTTTTTCAAACAAGTCAAAAGAGCCTGTGAAGTGACCATTTTCAATCTCAGAAATTGTTGTTTTATTGACTCCAGATTTCTCTGATACATTCTTTTGTGTATAACCTAGATTTTTCCTAGCCAATTTTATTTTTTCTCCGATTTCTTTTCTAGTAGCCATAATTTCTGATTTTTCCCTATATTTAATGTTAGCTATATAGCGAAATAGAGTATAAATTATACAAAGTTCGCCATATAGCTAACATCAGATTTTACCTTTATCCATTTTCTGAATCTGATTTAAATGAAGTTCAAGATACTTTAATTCTAAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTAATCGCACAGGCGATTTTTAGG # Alternate repeat : GTGAGTAATCGCATAGGCGATTTTTAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1213578-1213784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041295.1 Acinetobacter indicus strain 80-1-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1213578 28 75.0 32 A.A.GACC.....C.............. ATTCCGCTCTGCTGGCTGGAAATACCTGTCTA 1213638 28 100.0 32 ............................ ATTCGCCAAAGCAAGCAGCGCCTCTTCACCAC 1213698 28 96.4 32 ............G............... ATTGTCACGAACTCCCCCAACAATAAGCGCAG 1213758 27 92.9 0 ............G...........-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GTGGACACCTATTTGTGGATTTAAAGACAGTTATAGACAGCACACCAACGCTAAAAAAGCCCCGTCGAACCTTCACTGCTGAATTTAAACATCAACTTATTCAGCAATGCCAGCAGCCAGACACATCGGTGGCTAAGGTCGCAATGCAACATCAGATCAATGCCAATCTGTTGCATAAATGGATTCGTCAGTCCAGATCAATGGTTCCATCATTAACAACCCCATCTAATCCACAGACCGACTTCCTTCCCGTCATTCTTTACCCGACGCCAGTCAAACAAGAAGCACCTCCGCCACCTGTGCCAGAGAGGAAAGCTACCGCTCATATCAGGATTCCATTACATGATGAACAATGTTCCGTAAGGGATCAGATGATCGAAATCGAATGGCCGGTGGAGTCTGCAACTGAATTACTGCTTTTACTTCAGGGCTTGATCAAATGATCCGTATCGATGAAATCTGGTTGTCTACCCAGCCCATGGACATGCGTGCGGGTATGG # Right flank : AACACCCAAAATAAAACCGGAGCATTGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAATAGACTTCTTAACATCCAGGCAGTTTTTTCATGTACTTCCAGCCGTTGGGTTAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGATGCCAGTTTTACAAATTCTTTATAGGTTCCCGGTGCCGGAAAACCTAGTGCCCGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGCGTCATAAACATGGTGTGCAGACTGTTAAACTGCGGCCCGGTCACGTTCCAGTGGAAATTATGAGTCATTAAATACAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGTCCTTCGACAATTTTGGCCCGGTTATCTTCAGA # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], //