Array 1 36-389 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LUEP01000083.1 Listeria monocytogenes strain CFSAN026588 CFSAN026588_contig0082, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
        36	    29	  89.7	    34	...A..............T.........A	CCTTAAAAGGTTGCTTTTTTGTGATGAAAAACGC    	
        99	    29	  96.6	    35	........A....................	TTACCAACAAAGTCCCTACGCTCAATAAAACCAGA   	
       163	    29	 100.0	    38	.............................	CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA	
       230	    29	  96.6	    37	...................T.........	GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 	
       296	    29	 100.0	    36	.............................	ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT  	
       361	    29	 100.0	     0	.............................	|                                     	
==========	======	======	======	=============================	======================================	==================
         6	    29	  97.1	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                      	       

# Left flank :   TTGATAACCGTAATATTGTAGCAATTACGGAAAGTG
# Right flank :  CCTGAAA

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [40.0-6.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//