Array 1 237377-239991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXQB01000001.1 Listeria monocytogenes strain CFSAN049192 CFSAN049192_contig_0000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 237377 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 237443 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 237509 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 237575 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 237641 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 237707 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 237773 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 237839 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 237905 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 237971 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 238037 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 238103 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 238169 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 238236 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 238302 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 238368 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 238434 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 238500 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 238566 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 238632 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 238698 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 238764 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 238830 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 238896 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 238962 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 239028 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 239094 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 239160 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 239226 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 239292 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 239358 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 239424 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 239490 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 239556 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 239622 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 239688 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 239755 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 239821 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 239887 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 239953 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [239978,239984,239987] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49522-50850 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXQB01000019.1 Listeria monocytogenes strain CFSAN049192 CFSAN049192_contig_0000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49522 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49588 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49653 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49717 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49783 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49795] 49851 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49916 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49981 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50047 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50111 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50176 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50241 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50306 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50369 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50432 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50498 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50561 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50626 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50692 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50757 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50821 29 93.1 0 .......................A....C | C [50844] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //