Array 1 20137-20531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWE01000034.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32755 N32755_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20137 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 20198 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 20259 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 20320 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 20381 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 20442 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 20503 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TAACGCCGTTCTGCATACGCTCTACCGCGCGCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216343-213872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWE01000011.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32755 N32755_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216342 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 216281 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 216220 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 216159 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 216098 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 216037 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 215976 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 215915 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 215854 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 215793 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 215732 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 215671 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 215610 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 215549 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 215488 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 215427 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 215366 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 215305 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 215244 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 215183 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 215122 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 215061 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 215000 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 214939 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 214878 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 214817 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 214756 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 214694 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 214633 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 214572 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 214511 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 214450 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 214389 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 214328 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 214267 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 214206 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 214145 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 214084 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 214023 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 213962 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 213901 29 100.0 0 ............................. | A [213874] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234910-232888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWE01000011.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32755 N32755_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 234909 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 234848 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 234787 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 234726 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 234665 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 234604 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 234543 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 234482 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 234421 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 234360 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 234299 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 234238 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 234177 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 234116 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 234055 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 233994 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 233891 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 233830 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 233769 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 233708 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 233647 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 233586 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 233525 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 233464 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 233403 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 233342 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 233281 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 233220 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 233159 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233098 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233037 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 232976 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 232915 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTAACGCCGTTCTGCATACGCTCTACCGCGCG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //