Array 1 50-2276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUR010000036.1 Erwinia amylovora strain EaIF Ea_IF_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 96.6 32 ..........T.................. TGGTTTCTGCCACTACCCACCCTATCTAATGA 111 29 96.6 32 ..........T.................. CTCGCCATCAGTTTTTCACGCTGGCCGGGGGG 172 29 96.6 32 ..........T.................. CGTTTAAGAGCTGTAACAAAAGCCAGGATGGA 233 29 100.0 32 ............................. CTGTCTATGCCAACGAATACCTGCCGCAGGTT 294 29 100.0 32 ............................. AACCATAGTTCCTATAATTATCTTTCTGTTGT 355 29 96.6 32 ............................A ACCATCAGTTCCCTAATAATGATATCGGTTAT 416 29 100.0 32 ............................. GCGGCGATTTAAAACCGGGCGCAATATACAAA 477 29 100.0 32 ............................. CCTTGGCTGGAGCCGTGACAGGGCAGCTGAGG 538 29 100.0 32 ............................. TCATTTTTATAGCTAGAATTTTCCTTTGCTTC 599 29 100.0 32 ............................. GGCGGGGGCAGGCAGTGCACAGGAAAATGACA 660 29 100.0 32 ............................. TTCCTGCTGTGATTGCAGCAAAACCTAAATTT 721 29 100.0 32 ............................. CTAATCATAGGTGTCGCTGCAGTCGTTGGGAT 782 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 843 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 904 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 965 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1026 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 1087 29 100.0 33 ............................. TGTATCTGTCAGTGTGAGAATCTGCGCGTTACT 1149 29 100.0 32 ............................. CTCTGCATATCCATTGTGTCTTTGTCTGACAT 1210 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1271 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1332 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1393 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1454 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1515 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1576 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1637 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1698 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1759 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1821 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1882 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1943 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2004 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2065 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2126 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2187 29 96.6 32 .........A................... ATGATGGAACTGATAGTTTTATTAGTTGTCGA 2248 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TATGCGGGGATAAACCGGCAGCAGGTATTTATTGATAGCGCGATTGCAGG # Right flank : AATGATATGTCTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11741-12069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUR010000036.1 Erwinia amylovora strain EaIF Ea_IF_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11741 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 11801 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 11861 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 11921 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 11981 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 12042 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATCCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 150053-151057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUR010000015.1 Erwinia amylovora strain EaIF Ea_IF_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150053 29 100.0 32 ............................. GATGCCATTGCACAGGCCAAAGCGCAGTATGA 150114 29 100.0 32 ............................. ATTTCAGGCTTGCCGCCCTCGCCTACCCGGTA 150175 29 100.0 32 ............................. TACCGAGACAATTTCTCTGCTGTTTCAAGAGA 150236 29 100.0 32 ............................. GGCTTTGCGTTGTTACTCAATATGACGAACTA 150297 29 100.0 32 ............................. TCGTCCAGATAATGGGAACACCGCGCAGGACG 150358 29 100.0 32 ............................. CTGATTTTAGCGTTAAATATTTTCCTGAATTA 150419 29 100.0 32 ............................. CGGAAACGACATATTATATGTACGTTCGCACA 150480 29 100.0 32 ............................. CGAAGGAAATTGCGGGAAACAGCGAGCAGGCC 150541 29 100.0 32 ............................. GAAAATTCTAGCTATAAAAATGACTTAACAGA 150602 29 100.0 32 ............................. CAATGATGAGGGCAGCAGAACGAGACTGGAAA 150663 29 100.0 32 ............................. TCGTCGGCGCTTTTCTTTGGTGTCAACTTCGT 150724 29 100.0 32 ............................. AACGGCTCCCATATCACCCCAGTCTCGTGCCA 150785 29 100.0 32 ............................. CCGTTGCAGATGACCAGCTTGGAAATGCAATG 150846 29 96.6 32 ..A.......................... TCTCCCGCAGCAAAACAGCAATCGAAAAACCC 150907 29 96.6 32 ..A.......................... AGCTGAATTTCCCCGATGCCGCTGGAATTAAA 150968 29 100.0 32 ............................. TCTATTTCACGTGCCAGCCGGGGATGTGATCG 151029 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCGCGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : ATACTCCCTCTCAAGGATTGCGGCTTCTGCTTGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUR010000070.1 Erwinia amylovora strain EaIF Ea_IF_contig_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ATTCTTTCACATTCGACTATCGAATTTTGCAG 62 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 123 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCATCAAGGTGACCATTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //