Array 1 27299-28854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009500.1 Corynebacterium ulcerans strain 210932 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27299 29 100.0 32 ............................. GTTCTGGACAACTCTCTTCTTTGTCTTTATAG 27360 29 100.0 32 ............................. TCTCCGCATCACGAAGATTGTGATTAGCCTTC 27421 29 100.0 32 ............................. TTGAGTGCTGCGCGGAAGTTTCTGTCCACAAG 27482 29 100.0 32 ............................. GCTTATCAGCCACACGCATACCAACAAGGGCT 27543 29 100.0 33 ............................. CGTGGGCCAAACACAAGGCCTGATTGATAAAGG 27605 29 100.0 32 ............................. TGGAACCACCCAAATCTGCGGCCAAAACAATC 27666 29 100.0 32 ............................. CGCCCCTACCGGCGCGACCCGCAAGGACGCCG 27727 29 100.0 32 ............................. GGAAACCGCCCGTGGCGTTTAATGAGGAGCCC 27788 29 100.0 32 ............................. GCTCCCTCCGGCGATCAAGATCAATGCGAACA 27849 29 100.0 32 ............................. CCGTAAATGACAATCGGGTAGGTGATGAAGAG 27910 29 100.0 32 ............................. TTAATGTAGGCGGAGTGGTGCCAGAGTGGAAT 27971 29 100.0 33 ............................. CCCACCCACCGCGATTAAGCCACGTGGTGGGAT 28033 29 100.0 32 ............................. ATGAAGACGCCGTGGAGTACCCAGAAAACACG 28094 29 100.0 32 ............................. CGTCACCGACTCCGCATTATTCGCCGCAGCCT 28155 29 100.0 32 ............................. GCGCAATTTTCCGGGGCCTGATAAATCAAATT 28216 29 96.6 32 A............................ CGGCTGCCACTTTTCGAGCTGCTCCGCATTGG 28277 29 100.0 32 ............................. CGTGAGATTCTTCTACGGGGGCGCCCATGTTC 28338 29 100.0 32 ............................. GAGACAGGGGAACTGGAAGACATTGCTGACCT 28399 29 100.0 32 ............................. AAGCATGGAAAATGACGGCCGCATTGCGGTGT 28460 29 100.0 32 ............................. TCACCATCAACCCAACCCCCAGCCTGTGAGTC 28521 29 100.0 32 ............................. TCGGGAAGCTCTTTCACCGTGGCGATGATGTT 28582 29 100.0 32 ............................. TAACCTCACGGGCTTCTTCCAAATTCTTCTGC 28643 29 100.0 32 ............................. GCCAAAAACCCGGTAAAACCACTCAAATCTGC 28704 29 100.0 32 ............................. GGTAGGGAATTCACCCTGAAAGAAGAAGATAG 28765 29 100.0 32 ............................. CGGGCAAAAACATGAGCTCCGAAAGCATATCT 28826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTAGGAATTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGTCTTTTCTTTTGCCCATTTCCCGTCAGTTGTTAAAGAAGCTCGTCCGCGGATTTCACAACACCATGATTGACCAGCGTTTTTATCGCCGCAAAAACTTCGTTGATCTTGGTAGTCTCCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAATCTTCGTAGTGGAAGGCTCAATAAAAGCATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAAACTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACAGCTCTGGATAGAACTCCTACATAAAGGCCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCGTATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGACGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 104653-103598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009500.1 Corynebacterium ulcerans strain 210932 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 104652 36 97.2 36 ..............A..................... TTTATTACTGGCTGTAGTGGCGATGATACCCAGACC 104580 36 100.0 35 .................................... AACAATTGCTTGTGCTGTCATCCCAACACCCTCAA 104509 36 100.0 38 .................................... ATAATCACAGATCAGCCCATCGCCTTCCGCATCGGGCG 104435 36 100.0 34 .................................... CTCGACCGCATTAACGACCCCCTCAATCCGCTCA 104365 36 100.0 35 .................................... CGGTTATAGCGGTTTTCATTATCCGTGCGGTAAGG 104294 36 100.0 39 .................................... ATTGCACCGGCTTTAGAGCCATACACAGCGCCACGTGAA 104219 36 100.0 40 .................................... GGGCACGCTCCAGCTGGCAGCGGCTGCTCAGATTGAGGCG 104143 36 100.0 40 .................................... AAGCCACCACTGCCCCAAAATGATGTCCTTAATGACAGAA 104067 36 100.0 36 .................................... TCTGTGCATCGCCACAGTTTGTTGGTGCAGGTGCTG 103995 36 100.0 35 .................................... CCAGAAACCCCACAAGCACCAGCAGCTTTCACACC 103924 36 100.0 37 .................................... GGCTCTTTTGCATGCGGAATTGTGGGGCAATGGTAAT 103851 36 100.0 38 .................................... GCCCATGTGATGCCCGGCGCGACAGATCGGGCGAGGGC 103777 36 100.0 35 .................................... CGAACTCTCTGAGATGCCTAACTCTTCCGCCAAGT 103706 36 100.0 37 .................................... TCCGGCTGCTTCGCGAATGTGGCGGTTCAGTTCTTTG 103633 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.6 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAGCAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGTAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCTCTCGGCGGTATTGAACTAGCCCCCGAAGATGCCGTTTTACCGTGGCCTCTGATGGTCTAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAATAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAGAGAATCCATATCCAGTCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAGGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACATGTTTACGATCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTATACCTAGTCCTAAAAGAAACAGCGAAACCCATCCCAGCCCAACGCTAGCAGTATCACCAGAAAACTTGAGTATAAGGATTCCTAATACACCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1942127-1944416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009500.1 Corynebacterium ulcerans strain 210932 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1942127 29 100.0 32 ............................. CGCCACCGCCACTTCAATCGCTATAGCAACCT 1942188 29 96.6 33 ............................A CCGATAAGTGGGACAGCACGAAGGGTAACCCGC 1942250 29 100.0 32 ............................. CGAATTCTTGATCTCATCGACGGACATTTAAC 1942311 29 100.0 32 ............................. TTACAGGCCGAGGAGTTATTTTTCATGGCTAA 1942372 29 100.0 32 ............................. TGGTGATGCTAAGTGGGTTGAGTCGGGCAGTC 1942433 29 100.0 32 ............................. AAAAAGGGCAAAGTTGATCAGGTACGTGTGGG 1942494 29 100.0 32 ............................. AGGCTTTGAAGGATTCTGTGGCTGGCGCGATT 1942555 29 100.0 32 ............................. TCGCGCCTTCAGCTCTTCTATCTCCGCAAGAA 1942616 29 100.0 32 ............................. AGAATCCTGGCTCGTGAGCTTATCCTCAAGCT 1942677 29 100.0 32 ............................. TCAAGGAGCACCTGAAATGCTAAATCCCTACG 1942738 29 100.0 32 ............................. AATCCAAATCAGGGTCGAAAGATGCGAAAGCG 1942799 29 100.0 32 ............................. TGCGTTGGGAATCTGATCCGGTGAGGGGCCCG 1942860 29 100.0 32 ............................. AGAGCAGCTGAGAAAATCTGGTTTGAAGGCAA 1942921 29 100.0 32 ............................. GTTTTCATTTGTACGGTAGGCGGGTACAGATG 1942982 29 100.0 33 ............................. AGGATTGGAATCAGATTGCTAATGCGATCCCTG 1943044 29 100.0 32 ............................. ATTAAGCGTTTTGAGGGAAGGTGAAAGCGATA 1943105 29 100.0 32 ............................. GTGGCGAAAGCGGAGAAGATGTGCGTGTTTTT 1943166 29 100.0 32 ............................. GGCTATCTACCAGCGGAAACGATGTAAAGCCG 1943227 29 100.0 32 ............................. CATTCTTGTTTCTCCGGTTCTGTAGCAAAGCG 1943288 29 100.0 32 ............................. GCTGCGACTTCCTCGATCGAGAAAATGCCGGT 1943349 29 100.0 32 ............................. ATTTTCTATCCTCTTCTTAGTTGTTTTTCCAC 1943410 29 100.0 32 ............................. TTATGCCCATCAATATATTTATCGCCCATAAA 1943471 29 100.0 33 ............................. CCTTCCGGTGGATCTGGTCACGACGGTTTCTTT 1943533 29 100.0 32 ............................. TCCAGATCGACTTCAAGAAGGAGCAGCTGCAG 1943594 29 100.0 32 ............................. GATCACACGATCACCCTTCGCTAGGGAGTTCG 1943655 29 100.0 32 ............................. CCACTCCATGAAAACATCCTCCTATCACCAAA 1943716 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 1943777 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 1943838 29 100.0 32 ............................. ATCAACGGTGAGCTGCGAAATAAGCTCGGCGC 1943899 29 96.6 32 ............................T TGATAGTGATTAGCTGGTCAATCAGTGTTTCT 1943960 29 96.6 32 ......................C...... CTTGGACGTGTCCCGATCGTCATGATGATTAA 1944021 29 100.0 32 ............................. TGTTGAATCTGGCATCGACGAAGACGGAAAGC 1944082 29 100.0 32 ............................. CAGCCGATCTCCTACCCACTCTGTGGTGCTTG 1944143 29 100.0 32 ............................. GAAATCCCGCTAGACGCAGCTCTGAAAAATCT 1944204 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 1944265 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 1944326 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 1944387 29 82.8 0 ....................A...AGC.T | A [1944406] ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.2 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //