Array 1 758-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGD01000020.1 Pluralibacter gergoviae strain C7B contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 757 29 100.0 32 ............................. TTACGAGTACGGGATGAGGTGACCGGGAAAAT 696 29 100.0 32 ............................. CCTTCCAGCAGGTCGCCGAACGCCTGCGGCTG 635 29 100.0 32 ............................. ATATTGCCAGCGCACTCGACGTTACGGTGAGT 574 29 100.0 32 ............................. CTGAGTCGCGGTTGACTTGCGCTGCTTGCTAT 513 29 100.0 32 ............................. TTATCAGATTCCCCTTTTCAGCAGATGGATTA 452 29 100.0 32 ............................. TAGACTGAGCGGACAGGCTTATTTTTGCTGTT 391 29 100.0 32 ............................. TTTTTCCCTGATCACGTCAGGTTTACGCGAGT 330 29 100.0 32 ............................. AAGCTGAATCCGTTCGCTTGGCTGAACAAAAA 269 29 100.0 32 ............................. CATATTTAAAATATTACTTACATCAATCTTTG 208 29 100.0 33 ............................. CGGCTGCCAAAGTGGAATTATCAGGGCGCTGAG 146 29 100.0 32 ............................. CGCACGAAGATACTGCAGGACATTCTGAGCAA 85 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTACCTTGGGGGTGGAGATAGCCTTGAGATGATGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 456687-457508 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGD01000008.1 Pluralibacter gergoviae strain C7B contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456687 29 100.0 32 ............................. CACCGTTGTAGCCGAAGATGGCGACAACTTTT 456748 29 100.0 32 ............................. CAGTCTATGGACGCCATGCGCTCCCGCTGGCA 456809 29 100.0 32 ............................. CTGCTGCCGGTGTTCGCCGGCTTGGTGAGCGA 456870 29 100.0 32 ............................. CGCGGCTACTTTGCAACGGCCGTCCCGTCGGC 456931 29 100.0 32 ............................. GTATGCTCGCTCATAGCTCGCTCGTAGAATTA 456992 29 100.0 32 ............................. GCATTCGCAATCGGCGCCGGGGCCAACGTGTC 457053 29 100.0 32 ............................. CATGGCTTTGTACCCTGCTTCATGCCCTCGCC 457114 29 100.0 32 ............................. TTTCAGGGCCGATAACCATCAAAAATAAAAAC 457175 29 100.0 32 ............................. ATGGCCTTTAATACCGTATCAAAACGGCCCGC 457236 29 100.0 32 ............................. GTGCTGGCCACGCTGGCGGTCACCAGACGGGC 457297 29 100.0 32 ............................. CAAAGCGTTTCCGGGTGGGTGTGGAGGGTGCC 457358 29 100.0 32 ............................. CATGTTGGTTACCTAAAAGGTAATTATTAAAC 457419 29 100.0 32 ............................. GGTACCTCTGCGTTAAGACCAGCGATTTTGTT 457480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGCCACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : CAAAAATTTACACCGTAGCGCATCCGGAAGATGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10331-12651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGD01000022.1 Pluralibacter gergoviae strain C7B contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10331 29 100.0 32 ............................. TATGGGCCGCCGAGGCGTTCCATTTCGAACTG 10392 29 100.0 32 ............................. TCCATCCCTCCGAAACATGTTGCGGCCGGGCC 10453 29 100.0 32 ............................. ACCGGGCAGGCAGCGGCGGCTGACCTCGCGAA 10514 29 100.0 32 ............................. CAACCGGCCACTATATTTAACGGCTTCGTCGG 10575 29 100.0 32 ............................. CAGCAAATTAAAAATTGGATTTACTGGCGACT 10636 29 100.0 32 ............................. GAATCAGCCCAGAAAATCCTGCAGCTATCGGC 10697 29 100.0 32 ............................. CGTTGATTTCTGATTTACAGAGGCACATTCAG 10758 29 100.0 32 ............................. TGGCAGGAACACCTGACTCTGTTATTCCGGGT 10819 29 100.0 32 ............................. CCAGCTCGCCCTGAAACTGATGCAGGAAAAAG 10880 29 100.0 32 ............................. CCGGCACGGATGCGCTGAACCACCGGAGATCG 10941 29 100.0 32 ............................. TGCGCCAGCTTTAACCAGGTTTCGCCGGGTAT 11002 29 100.0 32 ............................. CATTGAGGACGGGATCGCCCATCTGCGAGGCT 11063 29 100.0 32 ............................. CGCTGACGTTCTTACCCTGGTGCATCCGGCAT 11124 29 100.0 32 ............................. GTGGTTATACGGTTAAAACCCTTTCAAAATTA 11185 29 100.0 32 ............................. TGGGACAGCTTTAACCAGGTTTCGCCGGGTAT 11246 29 100.0 32 ............................. AGACACAGCCAGTCATTAACAGGCTTGCGGCC 11307 29 100.0 32 ............................. GGCGCGGGAACGTACGCCAGGCAAAAGCTATC 11368 29 100.0 32 ............................. CTCTCGCTGATGTACAACGCGCAGAGCCAGTC 11429 29 100.0 32 ............................. CCCACCAGGCACATTTGAACTGTCTCCGCTGT 11490 29 100.0 32 ............................. GATAACTGAACATGTATTTCTCACGAGAGACT 11551 29 100.0 32 ............................. CTACTCAGGCACACCAGGCGCTTATGAAAAGT 11612 29 100.0 32 ............................. GGCTGACGAGCATTTTCACCAGGTTTGTTTTT 11673 29 100.0 32 ............................. TAGTTGCGGTTCCCTGAATGTCTATGCTGCTT 11734 29 96.6 32 ........................G.... CACTCTCGATCCGCCAGCCCTGGGCGTGGCTT 11795 29 100.0 32 ............................. TTTGATACGTTACTCACGGCCAGCCCCCTTGC 11856 29 100.0 32 ............................. TTCGCGGCATCCGCGAGGCGAAAGCCAACCTC 11917 29 100.0 5 ............................. TCAAC Deletion [11951] 11951 28 86.2 32 ..-........TT..A............. TTTTTCGCCGCGCTCGTTCCGACGGTTTAATA G [11957] 12012 29 96.6 32 ...................A......... CATGTTGAATCCTCGTTTCTGTTGGTTAAATG 12073 29 100.0 32 ............................. TTCGGTATCGGTCGCTATGAAATACCTGCTCG 12134 29 96.6 32 ............T................ CCTATAACAACGAGCATGAGCACAGCGAGTTA 12195 29 100.0 32 ............................. CAATGGTGCGATCCTCTATTTCCTCGGCACCT 12256 29 100.0 32 ............................. AGTTCGACGCTATCGAAACCCCGGCCACCGAC 12317 29 96.6 32 ............................C GGGACATGGCTCGGGTGCTGACTGATGGCGTC 12378 29 100.0 32 ............................. GCGCAGGGTAAAACGGTAGACCGGGTTATGGC 12439 29 100.0 33 ............................. GGTGACATTCTCGACTATGACGGCAGCACGCTG 12501 29 100.0 32 ............................. TTGTTATACCCGTCAGCTGTCCGCACGGGCTT 12562 29 96.6 32 ............T................ ACAACCGGCATGTACGGCGGGGAGCCGCCACT 12623 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTAGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCATGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCTTCACCAGCGGCAGCATTACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGTGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCTTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCACGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGATTGGAGGCGGCCGGTACGCCCCAGCGGTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //