Array 1 30-542 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHF01000007.1 Moraxella catarrhalis strain S11 S11ctg118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 32 ............................ TTATGGCATAGGTATTGGCGTAATAAAAGCAT 90 28 100.0 32 ............................ AACACGGCAAGAATAGACAAGGCGGAACGGAT 150 28 100.0 34 ............................ TTTCTTGCACGCTTTCATTATCGTACTCTTGCCC 212 28 100.0 33 ............................ CGAACAAGCCGTTCATGAAGCCAGTGTTCATTC 273 28 100.0 32 ............................ CCAAGAGGGTTAAAAAGAAAATATTTCCGAGA 333 28 100.0 33 ............................ ATTGTTTTAAATGTTGAGGGTAAGGCGGTATAT 394 28 100.0 33 ............................ AAAAAAGGCTCACGCCACGCCACGCCAAAAAGG 455 28 100.0 32 ............................ GCTCTACTTGCTAAGTGTTAGCAGTCTTTAAC 515 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GCAACACGCCATTTTTTAAGTGGCTTACAC # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18862-19735 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHF01000111.1 Moraxella catarrhalis strain S11 S11ctg35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 18862 28 100.0 32 ............................ ATCTTATCACATAGCTATAACCCGTTGTACTT 18922 28 100.0 32 ............................ ACACCACAGCACTCAGCAGGGTAGCAGTCAAG 18982 28 100.0 32 ............................ TTGTAAGTAGCGTAACTGGTTGGACGCCCACG 19042 28 100.0 32 ............................ AATTTTCCTTACCGCCCCATATTTCACCGAAA 19102 28 100.0 34 ............................ AAAGCTATCGTATTTTAAAGCTGTGGGGTCATCT 19164 28 100.0 33 ............................ TAACTGCTGACAACCGTCCGCCGTCGGTAACAA 19225 28 100.0 33 ............................ TGCCTGACCTTGCAGACACCGATGGCGATTTGT 19286 28 100.0 32 ............................ AATATTTTTATTTTATATTATTTACAATATTT 19346 28 100.0 32 ............................ TACCTGTGTGTTGCTCAAGCCCAACCAACTTA 19406 28 100.0 33 ............................ ATCACTTTTACAGAAAACAATAAAAAGTATTAT 19467 28 100.0 32 ............................ GATATCACCCCACCTTATCAGACGCTTACACA 19527 28 100.0 32 ............................ AAAGAAAATTTCTACGAATATAAAGATATAAA 19587 28 100.0 33 ............................ ATTAGGGAATGAGTCGCAGGGCGTAATCAAAAA 19648 28 100.0 32 ............................ AAAAACCCTGTGATGATTGGCGTTGAACAAAT 19708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAGACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : GTATTTTGTAGTTGAATATAAACGCCATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37-1085 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHF01000035.1 Moraxella catarrhalis strain S11 S11ctg34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37 28 96.4 32 .............C.............. GCTCCGATTAATCAGAACACGCTTATAAACAT 97 28 96.4 32 .............C.............. ATAATTTAGAAATTGACTAGATTATGAAAGTT 157 28 92.9 32 .........T...C.............. AACAGGGGCGGCAAAAGTTGGCGATTTAACAA 217 28 96.4 32 .............C.............. AGTTGTTACGCCAAGCTCTCGCACTTGTGAAG 277 28 96.4 32 .............C.............. ACCTGTTGTTGTAGAATAAAATTTAAAATTAT 337 28 100.0 32 ............................ ATCCCAAATCCCATCATAAGTGCGTGCGATGG 397 28 100.0 32 ............................ GCATTAAGCTTTTGGGACGGACAAAGCATTGT 457 28 100.0 32 ............................ TCACTCCACACATCGCCTGTTTTGGTGCGTGT 517 28 100.0 32 ............................ GTCGAAAGCTCTATGAGCGGTAATACTTCTAG 577 28 100.0 32 ............................ AACGGCGATAAGGTACGATTAACAGTGAACGC 637 28 100.0 33 ............................ ACCCACAGATGAATTAACTTCGTTAATCCGTCT 698 28 100.0 32 ............................ ACCAACAATCAAAGTTTGTCTGAGCGGATTAA 758 28 100.0 32 ............................ ACCGTTGTCGGTTTTGACATCGATGGCATAAT 818 28 100.0 32 ............................ TCGGTGATGGCAGAGACATACATTTTATCACT 878 28 100.0 32 ............................ CATCAGGAGCGGCAAAAATTGGCGATTTGACA 938 28 100.0 32 ............................ AAACGGTTTGCGTGATGCGGTCGCCATTTCTT 998 28 100.0 32 ............................ GCTTTATCAATGCCAGCTAAGCCAAGAAGGCC 1058 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : AGAAATATATATAAGTACAAAAAAAAATCTGTTGGCC # Right flank : ACTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTTGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //