Array 1 40218-39091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000028.1 Desulfobacter latus strain AcRS2 NODE_63_length_45021_cov_43.275382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40217 29 100.0 32 ............................. CCTCAGGATAAACGGGTTCGACTTATCAGTAA 40156 29 100.0 32 ............................. CCTCAGGATAAACGGGTTCGACTTATCAGTAA 40095 29 100.0 32 ............................. GAAAGAATAGGGCTTGTCTGACGCATAGTCTT 40034 29 100.0 32 ............................. TCGGGCGTGGAATTCCAGCTTTATGTGCTAAC 39973 29 100.0 32 ............................. TTGATCAACCTGCCCTCTACCAGGAGGGCAAC 39912 29 100.0 32 ............................. TTTTTTAACCCGTTTGTCCCATCGGTCAATGG 39851 29 100.0 32 ............................. CCCAGGAGGAGGGAACAAATCCGGCCGCGATG 39790 29 100.0 32 ............................. GAACTCTGATGACTGATACGGATTTGATATTA 39729 29 100.0 32 ............................. GACAATGCTCAAAAGCAACCCAACGTTGAGAT 39668 29 96.6 32 ............................A GAAGAGATGATTATGAATATCACAGGTGCCCC 39607 29 96.6 32 ............................A AAGTTAAAGTCGTTGGAAATTCGTTGTATGCT 39546 29 100.0 32 ............................. TTATTACAGATGATGATTTTCCATCTTTGAGG 39485 29 100.0 32 ............................. CTTTAGTGGTGGTGCGTATGAAGATAGTGACT 39424 29 100.0 32 ............................. AAAAAAAATTCGGCTGCACCTGGATCGGCTGC 39363 29 100.0 32 ............................. GGCCATAGAGCCGCCCGGACCTGCTGGATCAC 39302 29 100.0 32 ............................. AAAGTAAATGATAGCCGTCATTAACAGGAAAA 39241 29 100.0 32 ............................. TAAAGCCGCTTGGTTAAGGTTTATTTCACGTA 39180 29 96.6 32 .......T..................... TCGATTGATTTTGATGAACCATTAATCTTGTG 39119 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 CTTTTCCCCACACCCGTGGGGATGATCCG # Left flank : TAATATTTTATAATGCTGAAGATGTTTTCATGCTGGAAAAGCTGACTGTTCAAAGTTACAACCTGGCTATGAAAAAATTTCCAATATCCATGAAAATTAAAAGCAGTATTTCTGATAAAATGCTTACTAAAGGGCATATTGTTAATTTTGTTCTTTGAAAATTTGTTAAGACTGGATATTTGCCATAAGGAATTGGATACTACATATAGTATTTTTGTCTACCATTGAGCTACAACATACAGGTGCTTTAGACGTAAAAAGTGCTTATATCCAATGGCAGTGCTGACGCATGACTTTTTATGCTGATTATTGAAATATCAATAGGTTATGATTCAATCTAAGTCAAATTAACGCGAAAGGTCATTTTTCAACTCGTTATTATTACAGCACTTATTTATTCGTGCGTCGGCACTGATCCAATGTTAAGACTATTGAATTTGGATTCAATTAATACTACACTATATTGTATTTTATTAAGTTCTATGACGCAATATATTGGT # Right flank : GTACATCAGGTGCCAATGGGTATTGATCCGGGTTGGGATTACAACGTGGGGCGGGCGTCGGCGTTGGGGCGTGTCGGTACTTTGTTCATGGACAAACTGACCAGCATGCCTGCCAGGATAGATGCTTCCATGGCAGCAGATTTTCCAGAACTTGCGCTTGATGCCATCGCCGAAGATGTACGTAGCTGGATGAATAATGTCAAGGCCGGGAAGTTATCAAAGGCCGGTGGAAATCGGGTGGTTGGCGCTATGAGTTTGATAACCGTAGAAAAACTCAACGCCATTGGCGTTATGCCGGAAACCGCAGCAATCACCCTGAAGCAGCGCAGCATAAAACATCTGATTGCAGAAGAGCGGAAGGGAGATAAAGCGCTCCCGGAAGAGTTAGTATCTGAAATCGCCGCCTTGCTCCAGGACCCCAAAGCCGTGGTGTAGGACGGTCAAGGAAAGCACCCGGCTCTGCTCTATGTCATATCGGTTCCGATAGAGTGAATGCTGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACCCGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 26952-26471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000045.1 Desulfobacter latus strain AcRS2 NODE_87_length_32942_cov_37.623648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 26951 36 100.0 40 .................................... CCTGGCTGCCATGGCGCGACGAATCTTCCACGCTTGTTTT 26875 36 100.0 38 .................................... ACGGAAACATTTTTCGGATTTCCACATTACCGCGCCAT 26801 36 100.0 38 .................................... TGGTGGAGAATACTCTTGTTTTGTGCATAAGATTGTTC 26727 36 100.0 36 .................................... TTGAGTTTTAACGGGCATGCAAACATGATAAATATT 26655 36 100.0 38 .................................... TTATTGCTGTCGAAATGCTCAGGCTGTACCATGTTACA 26581 36 100.0 39 .................................... TATGTTCGCTTTTCCGTTCTGATTTGGTCGCTCTTGCAC 26506 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 100.0 38 GTCAGAAAGACTGCCTCGATTAGAGAGGATTAAGAC # Left flank : AAAGCCTTGAAATCTGCCGAGACAACACACTTGGCCCGACCATTGGGATCATGATGCTCAAGCCCCTGGCATTTTTAAAAGACCTTGTGTCCACCTCTGACGTCAATGCTGAAACCGATCACTGGGAAGCCCAGGCCAAAGCGGACGCCAGACAACTTAACCCGTCCCGCTTTGCATTTTTGTTTGACCGTCCCTTTTTTTCAGCCCTGGAGCATGTTCGACGGCACCATGACGAAATTTTCCCTTTTTCCTATCAGTAAAACATCTGCTCTTTGACAATTTGTCCGAACACCGCTATATTGCAGCCATTAACATGGCATATTGGGGGTTAACAGGACCCGCGGAGGTCCGTCATTTTGATATTATCAATAATTTCAAATAATTAACTTGAAATGCAACAAAAAAACACTGTGAAATTTTTTTCCGAACCCCGAAAATCGGGTAGGTCCGTTAAATCGGCTTCTGAAAGGCTTGCAGGCCAAGGCTTTCAACTACCCAGG # Right flank : GGAAAACTTCCCAAATTTGGGCATCCTTCATATCACCCCCAAAGTACTTTACACTTTTTTGGGGAATGATTGCTAAAAAATAGGTGCTTGCTCCAAAAAGTGTAAACTGGCAAATGAAGGATGCCCAAATTTGGTATCCAAAATGTAACTGCCGGAAAATATTTTATTTTACCATGAAGGACATGAAGCGCATGAAGAATATATACTGAGAAAGCAATCTTCATGTCCTTCATGCGCTTCATGGTTTAAATTAATAAAATCATGGGTGGATTTTTCAAACTCGTCTGTTACAATTGCCTGAATTTTTCCTCATCATTTAACTGTAAGAATGGAAATATAACATGGACGCCTATTCAAAAATTGTCAGAAAAGTACTTGACCAGGGCCAGGTTAAAGAAAATCGCACCGGCGTGAACACCATTGCCATTGCCGGGGCCATGTTTGAACATGACATGGCCGAAGGATTTCCATTGCTGACCACCAAATATGTGCCCTTTACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGACTGCCTCGATTAGAGAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9317-12312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000078.1 Desulfobacter latus strain AcRS2 NODE_133_length_17728_cov_35.962843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 9317 28 100.0 37 ............................ ATCCAAATTGAACACGCAGCATCTTGAATTTTGGGTG 9382 28 100.0 36 ............................ GGGGCATAAAACAAGGAGACATAAAATGATTAAAAT 9446 28 100.0 37 ............................ TGTTTCATGAGTTCAGGTGTATAAATGTTTAAAGACT 9511 28 100.0 36 ............................ GGGGATTGGGCCGGGCAGGAAGACGACATTGCCCAA 9575 28 100.0 36 ............................ GCGTTGGCTTAAGCTTAAGGCCGCCGCTTTATATTC 9639 28 100.0 37 ............................ ATGTATTTTGCCCATTCTTGGGTTTCGTGGAGTGGGT 9704 28 100.0 37 ............................ TTATCCGCAACCGCTTTGTCCTTGCCGGAATCCCCCG 9769 28 100.0 36 ............................ AAAGTACATCCCCGAGCTCCTTAGCGATATCTTCAG 9833 28 100.0 37 ............................ GCGGATTATGTGTTGAATGTTCCCTTTCACTCCCTGT 9898 28 100.0 37 ............................ CGGAACTTGACTTTGACGCCTTTAATTTTATGGGTGA 9963 28 100.0 38 ............................ CTTTGACTCTGCAATCTCTACATACCAATACTTTTCTT 10029 28 100.0 38 ............................ GATTAAATTAACCGCCCTGGGGACCGGGGACTGTTTGA 10095 28 100.0 37 ............................ TGTAATCTTCATATTTTTTCCTTATTCAATCCGTTGA 10160 28 100.0 36 ............................ CAAGCCATATTTGTCCCAAAGCTTAGCCATAGTTTC 10224 28 100.0 36 ............................ TTTTACCAAGAGAATTTTACATGTCTAAATCTAAAG 10288 28 100.0 37 ............................ GTGACCACGCTGAAAGAACAAATGGCGGCAGACCTGG 10353 28 100.0 38 ............................ ATTCTGATCATTGCTCGATTGTGTTTTAGATTCCCCGC 10419 28 100.0 36 ............................ TCGGAATCAAACAGCGCTGTAACATCACTTAGCCCA 10483 28 100.0 37 ............................ ACAGACAAACGGTGACACGTCTTATCCCGGCACATAA 10548 28 100.0 35 ............................ GGTCCTGCCGGCTGTGGCGTCTTTTTGTTTTTCAA 10611 28 100.0 38 ............................ ATTTTCAATATGCCCTGTCCGATCTTTGATTTTCTCGT 10677 28 100.0 36 ............................ TTTGATGCCGCTTTAACCGCAGCTATCCAATACGCT 10741 28 100.0 37 ............................ GTTTTCAATATGCCCTGTCCGATCTTTGATTTTCTCG 10806 28 100.0 37 ............................ GCACATCCCGTTGACAAGTCAGAACATGTTCCAGCCC 10871 28 100.0 37 ............................ TGTGCAGATGCAATTGAAAAATTAAATGAAGATCATG 10936 28 100.0 35 ............................ TTTCTTGATTTTACGTAATATTCTGCCATTTCTTT 10999 28 100.0 36 ............................ CGGGGTAAGTGGGACACAGGTAGGACACTGTAAATT 11063 28 100.0 37 ............................ CGCCGGTGGCGGCCCGGGTCACATCATGAATATTGAA 11128 28 100.0 36 ............................ ACATGGTCGATATCAGGAGACCCGCACCTATCCATA 11192 28 100.0 37 ............................ AAATCATAAGCCGGTCCGGCATCTGGCTTGTCTTCCG 11257 28 100.0 37 ............................ ACGCTGTCCTGGCATTAGTTTCTGTCCATGCATCAGA 11322 28 100.0 37 ............................ GAAGCCGTAGGATTACTCAGCATTGCCATTGCAGGGA 11387 28 100.0 35 ............................ TATATGAAAATTATCAATCCTGAGCACGGGTCGAG 11450 28 100.0 36 ............................ TTTTCTGTTTCTTCCTTGGTGTCTTCCTTGCATTTC 11514 28 100.0 36 ............................ TCAGTCCCTGCAATCGTCAGGGACTGAGTTTTAACA 11578 28 100.0 36 ............................ GCTGGCACAACAACGGCACCGGCTGTTGCCGAAATG 11642 28 100.0 37 ............................ ATGAATGAACTACAACGGGAAATATCTGTTTGGGCAA 11707 28 100.0 37 ............................ GTTCTGGATGATCCTGCGCCGATCTCTGCCGTCTCAA 11772 28 100.0 36 ............................ ATAAATCAGGTGTCGCATTTCAGCCTGAAGAGATTA 11836 28 100.0 36 ............................ TGGAACGATAAGCTTGAGTATGAAACGGATTCAGAG 11900 28 100.0 36 ............................ GAGCGAGTGGTAAGCAATGGCTGATATCGCTAAACT 11964 28 100.0 36 ............................ ATGAAAGATCGCCTGCAGATTGAGAATAATGAGATG 12028 28 100.0 37 ............................ CAAGCCGCTGCATGTGCAGGTTTAGGGAACATAGCCA 12093 28 100.0 36 ............................ TGTTACGCCTGCGGACAGTCCCATTGGTGGCGCAAG 12157 28 100.0 36 ............................ GTTATCATTCCGAGATAGTCGAATCCATGATGTGTG 12221 28 96.4 36 ...........................A TCTTTACCTGATAGGGATGGTTCTTTATTTAAGATA 12285 28 92.9 0 ...........TT............... | ========== ====== ====== ====== ============================ ====================================== ================== 47 28 99.8 37 GTTATCTATCCCCATGAGGGGTTATGAG # Left flank : AATCTTGAACGTCATGTGATGGGGATTTATGAATATGAATCATTTAAACGGAAGATTTAAGCATGTATATACTGATGACCTATGATGTGGAAGCGCGCCGCACTGAAAAATTTAAAAAATTGCTCCGAAAATATTTAGAGCATATTCAATACTCTGTTTTCAGTGGAGACCTGTCTGAAGCAAAGGTGATTGAACTCCGGCGGGAAATCAGTCGACTTTTAAGACCGAATGAGCGAGTAACGGAAATAAGTGCTGCTAACCGAAAAAATGTAACCGTAGCTCATTATATAAAATCTGAAAATGGAAAAGGTGAGGCCAAGCGAACGGAAGACAGTTCTCATTCATCGGATTTTTATGTGTTTTAGTCAAAAAAAGAGACATTCACTTCGATCCTGGTTGAAGTATTTGGAATATGGCAACGAAGTTTTAGAATGTTTGTTTACGGACTGTTTTGATGTAAGTTGAATTTTAGTGTATAATTTTTTTTATTGATTTCGGCA # Right flank : GTTTTAGGTTAAGGTGATCCCCAAAAGGGTTACCGACATAACGCGGGACAATTTGACTCGGTGATGAGAGTTTTGCGCTACCTAAGTATCATGAACCGGTGGTTCCGGAGAAGCCTTGTTTTAAAGAGTGCCCTGGCTTAAATCGGTAGTTTCCAAAAGGCTATTTTGCTTCATTTTTTTGCTCGAAATTTTGCCCGGCAAACTAACCGATAGTGTTTTGGTGATCATCATCAGAGGGACCGTTATAACTGTTTGGGATCAGGCAATATATCACCTGATCCAGAAACCGGGAAATATTTTTTGGCGTTTTTAGATATCCCGAACTATGATTAAATCAAGAGAGGAACATATATACTGTGAAACCTTCTTATGCACAATTGGAAGAGCAAATACAAAAACTGAAGAATGTCGAATCTGAGCTTATCAAAACCACCGAGGCACTCAGAGAAAACGAGTCAAGATTCCGTTTGCTTTATGAAAGGGCACCGGTTGGTTATCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTATCCCCATGAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 3220-2756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000076.1 Desulfobacter latus strain AcRS2 NODE_131_length_18370_cov_33.549252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3219 37 100.0 34 ..................................... TTAGCAGCCTTTTTACCTCTGTTCATTTTGTCTT 3148 37 97.3 34 ....................................C GCTTTTTGCCCATGAAAACCAACTTTCGCCCTTA 3077 37 100.0 33 ..................................... TGTTCTCCGCCATAAACTCTTTGCGTCTACGGG 3007 37 100.0 32 ..................................... TTGTGATTTTTTTAAAAAGTAAACATAACATT 2938 37 100.0 37 ..................................... TTGCACCGTCTGCGCTCATATCCCGGCCTGATTCGGA 2864 37 100.0 35 ..................................... GGTTCTAATCGGACCATTTGATCCGATTTGTAAGT 2792 37 91.9 0 .......A.......................G...G. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 34 GTCAGAACGACTGCCTCGATTAGAGAGGATTAAGACT # Left flank : GCTCAACCGCAAAATGATCCGGCCGGAGGATTTTCTTTTCAGGGATACAAAAATTGAAGCCTATGCCGATGAAAAGGAGATTGCCACCCAAAGGGCCGTGGAAATGAAACCCCATCTTTATCGGACCTTTATATCGTCCTATGAGGAGTTGATGCGGGGATCATCTTCATTTCGCCGGACCATCCAGACCCAGGTCAGAGCGTTTGCAGACGGTCTTCTGGATACTGGAAAACCATACCGGCCCATTACATTTTAAAAGAACATCTGCTCTTTGACAATTTGCCCGAACACCGCTATATTGCAGCCATTGACGCGGCATATTGGGGGGTTAACGGGACCCGCGGAGGTCCGTCATTTTAATATCACCTATAAATTCAGGTAGATACCTTAAAATGTGGCAAAAAAACAGTGTGAAATTTTTTTCCGAACCCCGAAAATCGGGTAGGTCCGTTAAATCGGCTTCTGAGAGGCTTGCAGGGCAAGGCTTTCAACTACCCAGG # Right flank : GAAGACGAAGAAAATATACCGAAAAATCAGTCTTCATGCGCTTCCGGATATATCAAAATGGGCAAGTTATTTAAAACTCATTCCTAAGCCAACTAAACTCGAAAATTTAGACACCCAACTCTGGCTAAATATCTTTAGTTTATTTGTGTTTGCTCTAAGGGGCTGAGCCGCAGAAACTGGTGACTGGAAACAAGAAACGTGGTCCACCCCCAAAGACGATTTGTAAATTCCCCGCTTGCTTTATGTAACCCTACACATTACAATGTCACTATGATTATAAATTTTCGTGATAATTGGCTGCAAAATTTTTTCATAGAGGACATTCAGTCCCAAAAAATACCCGCTGACATTCGTTCACGATTATTCAGGAAACTACAACTGCTGGATGATGCAACGAGTGACGCTGATCTGAGAAGTCCACCCGGCAATCACTTTGAAAAACTATCTGGAAAGCTTAAGGATAAATGCTCCATCCGTGTGAATAATCAATGGCGTATTAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTGCCTCGATTAGAGAGGATTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 7464-7207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000076.1 Desulfobacter latus strain AcRS2 NODE_131_length_18370_cov_33.549252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7463 37 100.0 36 ..................................... ACTATTTTCCCTTTTTGTTGTTCTCATAGACTTGTG 7390 37 100.0 34 ..................................... TTTCTACTGCCGGCACCTGGTGAGGCATGAGATC 7319 37 100.0 39 ..................................... TGTCAAGACGTTATGTCAAATAAATCGGTTTGCCAGGAA 7243 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 100.0 37 GTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACT # Left flank : GGATTGAGACATAATTTTCTCCTTATATTAATGTTATGTGTCTTTGGTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACCAAGGCCATAATCCAGAGCAAAAGCCCCTGGCGGTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACATATAGCGGACATTACTTTGTTTCCTTTTAGATTATAGTTCCGGTCATATGACTTGATACCGTTTTTTAGGCATAACATATTGATTTATTTCAGCAATTCTAAATTTGGAACAACCCAAAAACTCTCAATTTTTTCAAGCAGATATGATAGAATTTTTTTTGACAATAAAAAACTAAAATTTGAATTTCAAAGCAAATCGATGAAAAAATGAGAAAACATGACTTTGTTTAAAATCAACCAAATGGGTTAACGATTTGATATGTAAAGATAAAATCCAAATTGAGAATTGCTGGATTTATTTGTTTTAAGTTCCAAGTTTTGGTATCAAGTCATTTGACCGGAACTATA # Right flank : GCTTTTTTCTATGTTGAGTCATTAAGGACTGGCCCCGATAACGATCGAATCTGCCCCCCAGGCAAAAATATTTTAAAAAGTGTCACTCCGCCTCCGTATGGATTCTCAGACAATCCAACATCCCAAAGGAGGCGATCATGGTAAAGCTTCAGGCCGCAGCAAGAATTGTTCAGACCCCCCAAAGCAAAACGCCGGCACAGATGGAGACCCCCTGCACCGGTAAGCAGGCAGACCTGTTTTCCGACCAGGATCTGTTTGGCGTGAAAAAAGGGGCATTCATCAAAAAATCCCGGAACCGGGTTTTAGCCGATATTGAAGAGCTCTCCAAAAATAACCGGTGGGATGATATGTTAAGCCTTTACCATCCCGTGGACGACAAACTGCCGGATCTTATCCGGGCAGGGATTGATATCCCGGTGCGCCAGAAAATCGCCTTTGCACTGGGACAGATCGGGGCCTTTGATGATGCCATCAAAGAACTGATGGTATGTATTCGCGCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 8284-7813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000076.1 Desulfobacter latus strain AcRS2 NODE_131_length_18370_cov_33.549252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8283 36 100.0 36 .................................... TTGCCCATTGTTTTCAGCGTGGTGGCCAACATCACG 8211 36 100.0 39 .................................... TTGGTATCAGTACAGAATACCGATATATTCCCACTCTCT 8136 36 100.0 37 .................................... TAGACAATTCAAAGCTTTGCATTTGACTTACCAGTCT 8063 36 100.0 38 .................................... TTTGTTTCTCCTTTAAATTAGTTGTTATTCAAAATTAC 7989 36 100.0 36 .................................... ATAATTTTCTCCTTATATTAATGTTATGTGTCTTTG 7917 36 100.0 33 .................................... CAAGGCCATAATCCAGAGCAAAAGCCCCTGGCG 7848 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 37 GTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGAC # Left flank : ATCTTAGATAGGATTTATGTAATGTTTTTCCTGGTCTGCTTTGATATTGTTGACAACCGGGTCCGGTACAGGGTAGTAAAGATCCTGAAAGGATACGGGACCCGGGTTCAAAAGTCCGTATTTGAATGTGCCAATATGACCGAATACAAATTCATGAAAATGCAGTCGGATCTGGAGGAGATCATTGACCATGGTGAGGACACCATCCGTTATTATCCGCTTTGCAAACATTGCGTGGGTCAGGTGGAATTCTCCGGCACCGGGAATCCGCCCAATACACGGGCCTATTCCGTGTCATGAGGCCGTTTAGATCTTTTAAAATTTGTTCAAAAAATACATCAAGGAGGTCCGTCACTTTGATATATTTATTAAAATCAGTATGTTGCGCTAAAAACAGCATAATTTTAAGTGTGAAATTTTTTTCCGAAACCCCAAAATGGGGTAGGTCCGTTAAATCGGCCCTGGAAAGCCTTGATTGATAAGTGTTTCAGATACCCAGG # Right flank : ATATAGCGGACATTACTTTGTTTCCTTTTAGATTATAGTTCCGGTCATATGACTTGATACCGTTTTTTAGGCATAACATATTGATTTATTTCAGCAATTCTAAATTTGGAACAACCCAAAAACTCTCAATTTTTTCAAGCAGATATGATAGAATTTTTTTTGACAATAAAAAACTAAAATTTGAATTTCAAAGCAAATCGATGAAAAAATGAGAAAACATGACTTTGTTTAAAATCAACCAAATGGGTTAACGATTTGATATGTAAAGATAAAATCCAAATTGAGAATTGCTGGATTTATTTGTTTTAAGTTCCAAGTTTTGGTATCAAGTCATTTGACCGGAACTATAGTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACTACTATTTTCCCTTTTTGTTGTTCTCATAGACTTGTGGTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGACTTTTCTACTGCCGGCACCTGGTGAGGCATGAGATCGTCAGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGACTGCCTCGATTAGAGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 62002-61547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000005.1 Desulfobacter latus strain AcRS2 NODE_16_length_128249_cov_36.166685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 62001 36 100.0 33 .................................... GAAAGTAATGATACGATTCATCTTGGTGCAGAT 61932 36 100.0 33 .................................... ATTAATATGATTCAGTAATGGAGAACACTTCAC 61863 36 100.0 36 .................................... AATACTCTCAGCTGCATATGCAGCCATTTTTCGTAC 61791 36 100.0 35 .................................... CCCCCAACGTATATCCATACCTTTCCTATTGCAGC 61720 36 100.0 32 .................................... AAAGATTTTGACTATAAGAAATCCCACGCCAA 61652 36 100.0 34 .................................... TTGTAGACTTCTTGCGGATTAAAATTAAATTTTG 61582 36 91.7 0 ...........T......................GT | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.8 34 GTTGGAATGAGCACCGCTTATGAAGGTGATTGAGAC # Left flank : TCCGTACCTGGGGAATCGATGATTTGGACGAACCTATAATTATAGATGGTGTGGCCAAATAAACAGACTGTAAATTAAAAACAGCCTTGACCAGTAGGCAAAACCATGGGAAAACTAATAAAAATTTGTTGACGTGATGACTGGCTGGAACTCAATTGTCAAATTTTTCATGTAAAAGTTACAGATCTTTGAAAATTTATTACAAATTGCATCAAGCCTGAAAAAAGAGGCATTTCAGGCAAAACCCTTGCTGCTGTAGCGATCAGCTATTTTTTTTCGTGTCTGAATTTCAGGATAAAAGTTACATTTTGGAATAATATAAAAAATGAATCACATAGATTATATTTCTTTTTATTTCAAATAGTTAATACACACAACAAAGATATGCATTTTTTGTACCATGAAATATCAAAATAAGCTAAAACATTTTTTGATTTTTTATGAATTTTTTTACACACTATAACCAATCGAATTTAAAGATTTTTTTAACCAAGGTTAGG # Right flank : TGACAGAACATGTGAAGAATTTATTCAATGCCCAAAGACACAGGGGAGACATAATGGCAAAAGTCCGTCCCATTGTAGTGGCTTACGACATATCTAAAAACAAGATCCGTTCCCGGGTGAGAAAAATTCTGCGGGAGTGGAACCTGAGCAATCAGAAATCCGTGTATGAATGCCGCCTGACCCGGGCACAGGCTGAAGAATTATTTTTACAGCTTTCCCATGAAATTGATAACAAAACCGATAATCTGCTCATGGCCTGGCTGGAACCGAGGCGTCAGATCTTGACCCGGGGCCTGGGAAAAGCAACATCCATGGGAAAAAAACTGTTTTATGTTCCATGAAAGGAGACGTCACAAGTGGCGAAACCAGGGTGGTACATGGTCTGTTATGATATCGCCGATCCCAGGCGATTAGGGCAAATCCATCGTTTTTTAAAGAAAAAAGGGCTGGGGGTTCAAAAATCCGTATTTTTCATCCAGCGATCTGAAAAGGGGATGGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAATGAGCACCGCTTATGAAGGTGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 88620-87401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACADJ010000005.1 Desulfobacter latus strain AcRS2 NODE_16_length_128249_cov_36.166685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 88619 36 100.0 32 .................................... TAAATTAGCAGCAGATATTAGCCCAGCACCTG 88551 36 100.0 33 .................................... CATGGTTCATGTGGCCAATGAGATCCAGCTCGG 88482 36 100.0 34 .................................... CCCATCAAAATTATACCAAGAAAATTCTCCAGTG 88412 36 100.0 35 .................................... AGTTTGCATTTCTTCCACCACAACACCAAAGATCT 88341 36 100.0 36 .................................... AGTTCTTCTTCGTACTCCATTATTATTTTAAGTTCG 88269 36 100.0 33 .................................... ACTTCTCCGCCAACTACACCTTTGTGTGCAAGA 88200 36 100.0 34 .................................... CTATAACTATCATCAAGGTATTCTTCAAGGGTAG 88130 36 100.0 31 .................................... AATGAATTTAATGGGATAGCAACAATAATAA 88063 36 100.0 33 .................................... GCCATTCCTTATATCAAGAATCTCTATTTTTTT 87994 36 100.0 37 .................................... TGCAGCAATCGCCGCTGAAGTTAATAATCTTGCTATT 87921 36 100.0 34 .................................... AATAGGCAGTATACCCGTACCGCACACGAATACC 87851 36 100.0 31 .................................... TGATTTTAATTATCCATCCAATAAGTCTTTT 87784 36 100.0 32 .................................... GGGTTGTTAGAAATGAATATTTCAGTCATATT 87716 36 100.0 35 .................................... ATTGAACTTATTACATACAAAGCTAAAACTAAAAT 87645 36 100.0 34 .................................... CTTCGTGGTTTGGTCTGAACCACGAAGAACACTC 87575 36 100.0 32 .................................... TGATGTCTGTCACTGGCTTGGAGCGCACAAAA 87507 36 100.0 35 .................................... AAATATAGGGTAATGATATAGTCTAGTCTATATAG 87436 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 18 36 100.0 34 GTTGGAATGAGCACCGCTTATGAAGGTGATTGAGAC # Left flank : ACTTAATAGTATAGGAATTTCCATTCCCAGCACCCAGCACCTAACAGTCCACCCAAAGGGCGATAGTGGAATCATCGAGTGTAAATTAAAAACAGCCTTGACCAGTAGGCAAAACCATGGCAGAACTAATAAAAATTTATTGAAGTGATGTCTGGGAATATTCAAAACCATGTAAGAATTAAAGCTCTTTGAAAATTTATTACAAATTGCATCAAAGCTGGAAAAAAATCCGTTTCAGGCAAATCCCTTGCTGCTGTAGCGATCAGCTATTTTTTTTCGTGTCTGAATTTCGGGATAAAAGTTACATTTTGGAATAATAGAAAAAACAGACTACACGGTTTATATTTCATTTTATTTCAGGTGGTTAACATAGAAAATAGATGTATGCATTTTTTGTACCATAAATCATCAAAATAAGCTAAATCATTTTTTGATTTTTTATGAAAATTTTTACACATCACAACCAATTGAATTTAAATATATTTTTATCTACGGTAAGG # Right flank : ACATTTTGTTTTACAGCTTCCATTTGAATTGGGTCTAAAAATTCCCTATCAGCTTCATTTTCATTTTTTAACTCTTTATTTTGACCGTGAGACTGCTGTTTTCAGCAGCATCACATTGCTGCGATTTGGAATGAACACCGCTGAAATGGTAACATACAGGAGGATATCAACGAGATGCTGTTAAGGGACACTCCATTTAAGCTGGACAAAGGGCGTGTGCATTTGATGGTGGGTAATGTGGCCAGAAGGTTTTGTCTTCCAAATGGCGTTGAGGTGGATTTCAAAGGGATGATGAATGATCATCTTAAACGGATTGGCTATGAGATAATTTTTTTTGCCGATGCCGACGGTGTCTATTTTTTAGAAGAGGATTCAGTGCGCAGAGCTTTTGAAAAACGCACTCAAACCATAGAACAGCGTAAACCGGTTACAGGGAAGGGACGTGATAAATTATTAGGTTCTCCCCTGCAACGTCAAAGAACACTTGCGAATGCAGCACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAATGAGCACCGCTTATGAAGGTGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //