Array 1 11346-9911 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKF01000001.1 Salinisphaera halophila YIM 95161 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11345 29 100.0 32 ............................. TGCGTCCGTCGGCCCGAATCGCAGCGGCCACG 11284 29 100.0 32 ............................. AACACGTTTACCGGCGGCCAACTATCGAGCGC 11223 29 100.0 32 ............................. TGGCTTGCGGCCTCAGGTACGGCACAGAGTGG 11162 29 100.0 32 ............................. ATGTAATGGCCGTCGCGCTGCGGATTTACACG 11101 29 100.0 32 ............................. TAATAGTGCTTCGAAGGGCGCTGATAGACGGT 11040 29 96.6 32 ............................A GATCGAAATATTGCCCTACGAAGAATGCGACG 10979 29 100.0 32 ............................. AAAGACGCACAGGCCCAGAGTAAAGCCTGGAT 10918 29 100.0 32 ............................. TTCACTTCACTACCGAACTAGGCGACCAGCAG 10857 29 100.0 32 ............................. GCACATTTACTCGCGATATCGCCGAGAAATCG 10796 29 100.0 32 ............................. GAGCTGATCCAGCAGAATGCCGCCAAACTGGT 10735 29 100.0 32 ............................. TATTAGTGAAACTCGGGACACGATATCGGGCT 10674 29 100.0 32 ............................. ATCCCGCATGCGATGCGGACGCAATACCTTGA 10613 29 100.0 33 ............................. GAATGCGCGAGGCAATTCGATGCAATCTGTCGC 10551 29 100.0 32 ............................. GGCGGCACCGATCTGGGCAGCGGCGTGTATCG 10490 29 100.0 32 ............................. CTCGTAGTAGCCCGCGAGCTGCGGCACATCGA 10429 29 100.0 32 ............................. GCTCTCGCCGCATCCGCAAACTGTGTGCCCCT 10368 29 100.0 33 ............................. CATGCTGCCTAGTCATCCCCACCCCAGCGATGC 10306 29 100.0 33 ............................. CGATCCCGGTCTTGTCGATTTGCGCTACAGCGC 10244 29 100.0 32 ............................. GCGCCGTGCGCGGGTTGCAGCAGGCGTCCGGC 10183 29 96.6 32 ............................A AGCTGCGCGGCGACGGCCCGGGCCGCCTGCAC 10122 29 100.0 32 ............................. CCCCTGTAAAAACAGGGGCCTAACTGGTGGAG 10061 29 100.0 32 ............................. CCACGCAAAGCGGCCCACGACTAGACCATTGG 10000 29 100.0 32 ............................. CCACTTTGCATGCTTGGTGTCGGCCAGGTCGT 9939 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 CCGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CGAAGTGCACGTCACCCTCGAGCACGCCGACGGCGACATCCTCGTGGTCGTCGCCGACAACGGTCGCGGCATGCCCGACGACGCTCCGCAGGGCCTCGGCCGCGAGCTCATATCCTCGCTCGGCGACCAGCTCGGCGCTCGGATCGAGATATACGAGAACAACGGCACCACCGTCCGAATCCGCGTGCCCGAAACAGCAATGCAAGCCCACGATTCCGGCGACTCGTAGGCCGGGCCCCGGCGCGGCACGAACCCGATTCGCCCGAATCATCGCCAAAGGTGCTGCTTGGCGATGCGCCCCGTGATGGTCGAGGATTGTCTTAGCAAGGAACAATAACCCGCTGTGCTGGCGGTCTTTCGATTAGCCGTACGTCGGCACGGTTTGCGGCCTTGCGTAGGCCTGATGTTTAACAATCGGAAATGATCAATAACTGATCAGTTTGTCTGGTGGAAAATTCAGGGTCTGTTTTCAATAATATAAACAGCCGTTTACATTTAGA # Right flank : CGAGCCTTGGAAAACGAGTTGAAATTCTCGTTTCAATTCGTATGATTTACATGTAAATCATACGGGGTGCGACTATGAGCCGAATGATCAATTTCCGTGCTGACGACGAACTGGATGCACGGCTAGCTCGGTTGGCGCAGCTGACCGGGCGAACGAAAACGTTTTACGTGCGCCAAGCCGTTGAAAGCCAGATCGAGGATCTGGAAGATATTTATTTAGCTGATCAGGTGATGACCCGTCTCGAAGACGGTAGCGAGGCCACCTACGATCTTGACGATATAGAGCGTGATCTTGGCCTGGCGGATTGAGCTGACCGAGACCGCGCGCAAGACTCTGGAGAAGCTCGATCCGCCAACAGCGCGGCGGATCTCTAATTACTTGCGCGAGCGTGTGGCTGTAGCGGATGAGCCCCGCCACTTAGCAAAAAGTCTTCAAGGCGAATTGCGGGAATACTGGCGATTTCGCGTCGGCGACTATCGACTTGTATGTGATATTCAGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10520-9209 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKF01000130.1 Salinisphaera halophila YIM 95161 contig78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10519 29 100.0 32 ............................. GTTTCCGCATCACGTATAGATGGGAGGAGTTG 10458 29 100.0 32 ............................. CGAGTCGGATATGAACATTTGATACCCCGGCA 10397 29 100.0 32 ............................. GACAACGGCCAAGCGGATTACGAAGCGCGGCT 10336 29 100.0 32 ............................. ACGGTGCATGACGCTGACTACGCGGGACAGTC 10275 29 100.0 32 ............................. CTGTTTTCGAGCAGGAACTGGATCTGAATTTC 10214 29 100.0 32 ............................. GATCAGGCCCAGATGCGCCGGCAGGAGTTCCT 10153 29 100.0 32 ............................. ACCCAGGGAATGGCACGGAACACGAAGCGAAG 10092 29 100.0 32 ............................. CATCACAGGAGCCGGATACGCACACGTCACGC 10031 29 100.0 32 ............................. GTGACGACTGGCTAAAAGACATGCTGGTCAAA 9970 29 100.0 32 ............................. GCGCGGGAGTACAGCAAAGTCCGCGTGTCGCG 9909 29 100.0 32 ............................. CCGTGGTTGGACGGTGTGGCGGAAAGCCAGAG 9848 29 100.0 33 ............................. GACACCATCCTAAGCGTCGGCAGCTCCGCCGTC 9786 29 100.0 32 ............................. ACTAGACACGTTCCCTCTTCCAGCAGGTAACC 9725 29 100.0 32 ............................. GTCTGAATGGCCTTGCCGTTGGCGACCACACT 9664 29 100.0 32 ............................. ACCAGACATATACCCTCATGGTTTCCCCGCAA 9603 29 100.0 32 ............................. CGGCCATTCGTGGACGTAATGGGGCACCCGCT 9542 29 100.0 32 ............................. ACCACCCTCAGGGCTGCCCGGTCCTGGGTGCG 9481 29 100.0 32 ............................. CCCGCTCGCGGGCTGGTCGTGCGCGATCCGGT 9420 29 100.0 32 ............................. ACGTGATTGGTCCATTGGCGCGGGTCTCTGGG 9359 29 100.0 32 ............................. TCGAAATCGATGACCACGCTGCCCTCGAGGCG 9298 29 100.0 32 ............................. TCGGATTCAACCAGAACAAGTTCATCCGAGTG 9237 29 75.9 0 .T.C..........G....A.....GG.T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.9 32 CCGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : CTCGGCCCAAGCATTCGCTTGGG # Right flank : TGTGACAAGGTGCTGGATCTGTGAGCCGCGGGCCACTGGTATCGATCCATAGGTTCGCGGTTATCGCAGGCCTGGTTGGGCGCTACACTAAACGGTGCACGCGTCCCGCGGAGAATCTGGACACCGCAGCCGCCTGCGTTCCTTTGGCGTGGGTTAAGGCGAATCGTTGGGGATAGTTCCAGTCCCCACCACGTGCTTTTACCGCCGGGCCCGCGCGGCGCCTCGAGGCGTCCCGGGCTCGGATCCCACTATTCGTGTTCGACCGGCGTTGCGCGTTCGGAACAGCGCGTGGCTATCGGAGTCGTCGTCCTTGGACACGGCATGCGGCCTTCCAGATTGCCGAAGACGAGGATTTCGTGATGGGTTTCTTGGTGTGCGCACCACCGGCGGATAGTTCGTCGAGCGCAGTTCCCGGCATATGTGCGGATGCAAACCGGCGCCATGCACGGCGTACTGAAAACGGCCCGCGGTGCCGCCGGCAGCGGCCAACCACCACATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCAGTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2730-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKF01000004.1 Salinisphaera halophila YIM 95161 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2729 29 100.0 32 ............................. GCTGCTGCCGGCATGGGCGTGCTCATCACCGT 2668 29 100.0 32 ............................. ACATTCTCCATCACGCTCGCCCGCGGCCGCCC 2607 29 100.0 32 ............................. ACCGCCTACAACGGCCGCTCCATCCGCGCCCG 2546 29 100.0 32 ............................. AGCGCGGCCGATCGCAACGACGACCGGTTCCT 2485 29 100.0 32 ............................. AACACGTTTACCGGCGGCCAACTATCGAGCGC 2424 29 100.0 33 ............................. TGCCCGCCGACACGCTGGAGAACGACTGATGCC 2362 29 100.0 32 ............................. CAGGACGGCACGCCCTATGCCAACGCGCGCCA 2301 29 100.0 32 ............................. CACGCGATAACGTGAGTCGCGAGCGTGGCAAG 2240 29 100.0 32 ............................. TTGCCCGGCCCCTTGCTGTCCTTCAGCGCCTG 2179 29 100.0 32 ............................. TGTTCTTGACGACGCCGCCGCTGGGCGACTCC 2118 29 100.0 32 ............................. TCGATGCGGGCGGCGGCGCCGTTATCGAAGAA 2057 29 100.0 33 ............................. GCGAAGACGCCGAGCGGCCAGGGCAAGAACAGC 1995 29 100.0 32 ............................. TCGCCGACCGCGTACTCGGCCAGCTCAAGGCC 1934 29 100.0 32 ............................. GGCCGCTCGCTCGTGCGCCGCGGCTACCTGCT 1873 29 100.0 32 ............................. CAACCGTGGAGCGCATCTGACCATGCGCATCG 1812 29 100.0 32 ............................. ATTCCGGCCGCCGCATCGACATAGGGGTAGTC 1751 29 100.0 32 ............................. AGGGCCGCTCCGATATGAAGACCAAGACTCTC 1690 29 100.0 32 ............................. GCCGAGGGGTTCGGCACCGAATCGCAACTGTT 1629 29 96.6 32 ............................T ACCGCCAGAAGATGGTCAGGGCGTGATCCCAG 1568 29 100.0 32 ............................. AGCGTATTCATCGAACTGACCTCGGCCGTGGT 1507 29 100.0 32 ............................. ACGACCGAGAAGTTCGACGGCACGAGTGGCAG 1446 29 100.0 32 ............................. CTGCCCCTGCGCGACTACAAGAAGGTGCAGGA 1385 29 100.0 32 ............................. ACAAGATTGTCGGGCTCGCCGATCGCGCGACC 1324 29 100.0 32 ............................. GTACACCATGGCCAATTCATTGATGAAATCCG 1263 29 100.0 32 ............................. TACTGGCCGGACATGACGCCCGAGGAGATCGA 1202 29 100.0 32 ............................. CCCGCCCGATCGGGCGTCAATACGCTTATTCC 1141 29 100.0 32 ............................. GGTCGCGGGCGTTTTGGATCGCGCGCTGCCGC 1080 29 100.0 32 ............................. CCCCAATCCGGCCGTCCACGCAATCCACAACC 1019 29 100.0 32 ............................. CCCATGTCCGCGCCGCGCCGCAAGAAGTGCCG 958 29 100.0 32 ............................. CAAAACAAGGGCGGCAGTGCGCCCAACGGAGG 897 29 100.0 32 ............................. TCAAGTAGAGGTCGCGATGAGCAATGTCGTGT 836 29 100.0 32 ............................. CCACGGCCGAGGAAGCGATCGCGCGCTGGACG 775 29 100.0 33 ............................. GACCGGATCCTGTTCGGGAACGTCACCGGCGCC 713 29 100.0 32 ............................. AGATCGTATGAAAAATAAGATGGACGACATGC 652 29 100.0 32 ............................. ATGGTCGACGCCACGGGCAAGATTTTCCAGAA 591 29 100.0 32 ............................. TACCGGCGGTTGCGAAACAGTTTCCGCGTGAG 530 29 100.0 32 ............................. CTGTAGGTGTTTCGCAAAAGCTCTGCGCTCTG 469 29 100.0 32 ............................. CGTTCCCGTCCGCGAAACCAATTTCCGCGCGG 408 29 100.0 32 ............................. TAGCACCGTCAACATCCAGATGAGCCCGTTCT 347 29 100.0 32 ............................. CCCATGATCTGAAACCGGCCCCAGCTACACGA 286 29 100.0 31 ............................. CGCAGCGGCGCCAGGGTGGGCAATCCGATGC 226 29 100.0 32 ............................. ACGCGAGGAGATAGCGTCGCCCGGCGGCGTTG 165 29 100.0 32 ............................. GATGAATCTGCAACAGCGCAAGCGGCGCGCGT 104 29 100.0 32 ............................. AACTGGAATTGTCGTATGCCCCATATTGACGC 43 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.9 32 CCGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : GCGTTTTCAGCCGCTCATCGCAACCGACTGATTTATAAAGATCTTTAACAACACGAATTGATCAATAAATAACCAATATCGCTGGTGGATTTACACCTCGCGATTTTGGCTTTTGAAAACAATCATCTATGATTAG # Right flank : GTGGGCGGGGCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCAGTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68077-63248 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKF01000057.1 Salinisphaera halophila YIM 95161 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68076 28 100.0 32 ............................ ACTTGATATCGCTGTAGTTGCCGTTAGCTGTC 68016 28 100.0 32 ............................ AATGTAATACTATATTCAAGACAACGGAGAAA 67956 28 100.0 32 ............................ AGTCTGACGCGCTGGCTTTCGCATGACCATTA 67896 28 100.0 32 ............................ TATGCGCCGCACCATCGCCATAGGCTGCCTAC 67836 28 100.0 32 ............................ GTTGAACGGCATGCCATTGTCCGCCAGGATCT 67776 28 100.0 32 ............................ ACTGACGTTAGCGACGACGATTATTACTACTT 67716 28 100.0 32 ............................ TTCGCCTTATCCGCGCAGGTTTGATTCGGCTC 67656 28 100.0 32 ............................ TGAACGATGAATCCGACGCGCTGGTTAAGGCC 67596 28 100.0 32 ............................ TAGACGACTTCGAGGGGCTAGACGGCCACCAA 67536 28 100.0 32 ............................ ACGAATGGGCGCGATCAAATCAGCGGGTATCG 67476 28 100.0 32 ............................ CACAAGATCGAACGGCTAATCCGCGAAATACG 67416 28 100.0 32 ............................ TGACACATCAGACTGCTCGCGGACGTAACGCA 67356 28 100.0 32 ............................ ATGACATAACAGGCAAACGCAGAGCAGCACTG 67296 28 100.0 33 ............................ ACGGAGAGCGCGGTTAGCATGCAAAAAATAATA 67235 28 100.0 32 ............................ CTGGGGCGGATAGGCGGTTTTTAGGCGTGACC 67175 28 100.0 32 ............................ ATGCGCCGACCTGCTGACCGCCTGGCCCGGCC 67115 28 100.0 32 ............................ GTAGATCACGAAACCGCCTGCGGCGGCGCTAT 67055 28 100.0 32 ............................ TGCTGACCGCCTGGGCTCGCCACGCGCCGATG 66995 28 100.0 33 ............................ ACGTTGTACGCCCTAGAGGAAAAGGGTTTAGTC 66934 28 100.0 32 ............................ ATTATGAAGCGCGATCACGCCGAAAATTGTTG 66874 28 100.0 32 ............................ AGGGTCGTATCGGGCACCTCGGCGCCACCGTT 66814 28 100.0 32 ............................ CGGACGGCGAAAAACGCTGGAACGCCAAGCTG 66754 28 100.0 31 ............................ TCGCGACGACGAAGGCGTGGCCGAGAAAGAC 66695 28 100.0 32 ............................ CATCGAACATGGTCGGGAACGTGCAGCTACCG 66635 28 100.0 32 ............................ CATGGTCTGCGCCTGACCTGCTAGCCCGACGC 66575 28 100.0 32 ............................ ATAGCCAGACGCCGTAGGTTTTGCCAACCTCA 66515 28 100.0 32 ............................ TACTCCCTCTTGATCTCGTGGCACACACGGAC 66455 28 100.0 32 ............................ ATGGAGTACACGCCGGCTGTCACCGCTCGAGT 66395 28 100.0 32 ............................ TATTTCAGTCTCCAGTTTTCACCCATCGGCGA 66335 28 100.0 32 ............................ ATCAACGGCAACCTGCAGCTTAACGGCGCGTT 66275 28 100.0 32 ............................ CGCGACTCAACCGGAGAAAGACAATGAGCATC 66215 28 100.0 32 ............................ GTCACCCTCACCCGCGCCGACGGCGACCGCCA 66155 28 100.0 32 ............................ GTCGAACTCGTCACCCGAGGATGTCACAAACG 66095 28 100.0 32 ............................ TCATCTCGGCGAATGAACTGGAAGGCCGCATA 66035 28 100.0 32 ............................ ACGTTTCGAACACGGCTATCCAGATGACCCGC 65975 28 100.0 32 ............................ AGGCGAATCCCGCGCCGGGGCCGTGGTCCGGC 65915 28 100.0 32 ............................ AGATAGAAACGCGCGACGGCTGGGAGCATCAC 65855 28 100.0 32 ............................ CACCTGGAAGCCGAGAGGGATCGTCTGGAATG 65795 28 100.0 32 ............................ CGGTCAGCGTGCTGTCGCAACGTGCGGCGACC 65735 28 100.0 32 ............................ CGGTAGATGCGGTGGATCGACTGAATGAAGTC 65675 28 100.0 32 ............................ TCAAACACCCCGGCATGCCGAATCACACCCTA 65615 28 100.0 32 ............................ CACTGCAAACGCTTCAAAACGCGGTGAGGATC 65555 28 100.0 32 ............................ ACCTGCGCCGGACGATCCGCCATCATCAGTCG 65495 28 100.0 32 ............................ AGGCAGCCCTCGCGGGTGACGCGGAACAGGAG 65435 28 100.0 32 ............................ ATTGAGCGTGCGCATGCGATTCACGTCGTGCC 65375 28 100.0 32 ............................ TACTGCACGAGAACTGCCGGCTCCCCGTGATC 65315 28 100.0 32 ............................ GCCTACAGCCTGGATCGCGTCTATAGCCACGA 65255 28 100.0 32 ............................ AGCAGCACAATCAACGGGTCCTGTTTGTCGTC 65195 28 100.0 32 ............................ ATCGACGAAGTGATGGACCGCGCCCGCAAGAC 65135 28 100.0 32 ............................ AAGGTCAGCCTCAGAACCTCGATCTGCATGAC 65075 28 100.0 32 ............................ AATCACCAACACCCCTTTGGGTGCGCTCCGGC 65015 28 100.0 32 ............................ GTTGGAATCCGCTCGGGTATGTGTCCGCCCAG 64955 28 100.0 32 ............................ TAGTTAGAACACGCCGCTAGCGGCGCTCGGCA 64895 28 100.0 32 ............................ CAGCAGGGCAGCGGCGGCATCAGCCAGTTCAC 64835 28 100.0 32 ............................ TGTAGCTCGTCGCCGGCCGAGTGACCGCCGTC 64775 28 100.0 32 ............................ GTCGACACCGAGCGCGCGCTCGCCCGCTTCGC 64715 28 100.0 32 ............................ ATATGTTCGCGCCCCAGCTGTTTTCAGCCCTG 64655 28 100.0 32 ............................ GTGCCGGCGTTGAGGTTTGATGCGTTGCGGAA 64595 28 100.0 32 ............................ TGGCTGCTGCGACAGCGCGGCCACACGTACGG 64535 28 100.0 32 ............................ TCATTCGCGTCGGCACCATCGCCGCCGTCGAC 64475 28 100.0 32 ............................ AGCTACAGATGGCGACGCTGATGGGAATGCAC 64415 28 100.0 32 ............................ TAAGCACAGGTGTCGCGCTGAAAGCGCGATCA 64355 28 100.0 32 ............................ ACCTACGGCATCGAAACCCGCGCCGAGGCCGC 64295 28 100.0 32 ............................ CGGAAACCCCGGCCACACTCACCGGCTGGAAA 64235 28 100.0 32 ............................ GACGACAACAGGCGGCGGCGGCGTCACGATCA 64175 28 100.0 32 ............................ GACCAGCTCGACATCACGCTCACCGACCACGA 64115 28 100.0 32 ............................ ATAGCATCGCAGCGGCGCGAGCTCGCCGAGGT 64055 28 100.0 32 ............................ GACTGGGGCCGGCCGTACCACAGCCGCCGGAA 63995 28 100.0 32 ............................ AGAGGCCGTCAGCACCGTGTGCGCCGAAATCG 63935 28 100.0 32 ............................ AGCACCTTCAAATGTTCGGCCTGACGAGTCGA 63875 28 100.0 32 ............................ TAACTTTCGCGCGTTGCTCATTATGCGAAAGA 63815 28 100.0 32 ............................ TTGTTTTTGCGGGGGAAAATAGTCAGGGCCAT 63755 28 100.0 32 ............................ AGAATGTAGGACGTGACTGCCGGTAGCGTATC 63695 28 100.0 32 ............................ TGCGTGCCGTAGTCCGTCGTGTCGCCCGCGTC 63635 28 100.0 32 ............................ AGAACTGTGCGGCGCGGTAGCGCAGCCAGGCG 63575 28 100.0 32 ............................ TCTGGACCGTCGCCCGGGTGCGCTCGGCGAAG 63515 28 100.0 32 ............................ ACACTCGGGCGCATGGTCGGTTTCTGGGCGCG 63455 28 100.0 32 ............................ AGGCGCGGATGGCGTCGAACACGCGCAGCGGC T [63442] 63394 28 100.0 32 ............................ GTCGTCGGCGATCAGGCTGATTTCGTGGACGC 63334 28 96.4 32 .....................C...... ATGCGGTCCCAGACGCGCTCTAGCACAGACTG 63274 27 89.3 0 .............C........G.-... | ========== ====== ====== ====== ============================ ================================= ================== 81 28 99.8 32 GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Left flank : CTCCCGCCGTTCTTTAAAAATCAATAGCTTGTAAATATATGTCTCT # Right flank : TCTACAGATGCACGGCCATTGGTGCTGCCGCTCACACCCAGCGGCCGCACCTTCACGTCACGACACGTTACTCCGCGCGCGAAAGTGCTCGACGCCTTCGATCACGCCGCGGGCGTGGTCGGCTCGGGCGAGGTAAGCGTGGTCCAGGCCGGGGACGGTGGTGAGGTCGTCGCGGTAATTGGCGACGATGATCGCGCAGGGCAGCGCGCGCAGCATCTCGATGTCGTTGCCGGAGTCGCCGGCGACGTAGACGCGCGCGTGCGGGATGCCGTGGCTCGCGGCCAGATGGGCGACGGCGCCGCCCTTGGAGGCGCGTGCGGGGAGCACGTCGACGAAGCGGTCGTGGCTGTGAATCACGGTGGCTTCGACGCCGCGGGCGGCGAGCACGCCTCGTATCTTCGGCGCGATCGCAAGGCCGCCCGGGCAGAGATAGCTGATCTTGTGCCGACGCTGTTCGAGCGCGCTCTGGGGCGTAAGCTCGGACAGCTCCGCCAGCGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //