Array 1 200177-199898 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBTY01000034.1 Proteus mirabilis strain T1C contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 200176 26 100.0 37 .......................... AACCCGTACAGGTAGTAACGGTCAGATCACCTATTTA G [200175] 200112 26 92.3 37 ..............A..........A CGCCCGTAGAAGTAATAATGGTAATACCATCTACCTA 200049 26 80.8 37 ..............A..C.CA..C.. TACCCGTACAAATAGTAACGGTGAGACCATCTATCTC 199986 26 84.6 36 ..............A..C.CA..... AGCTCGTACAGACAGTAATGGTACTACCATCTACAG 199924 26 100.0 0 .......................... | G [199923] ========== ====== ====== ====== ========================== ===================================== ================== 5 26 91.5 37 AATAAAAGTGGTCAGGTTATTGGTTC # Left flank : CCGGCGTTGTGATCACCTATAGCTTAATGACCTTTTTTTTAACCTATCATGGGTAGATAACCGTAAATAAAGGCATGATAACCTGCTGATAATAAAAAGGAAGGAAGTAAATAAAGTAGGGTTGAACTCATCAGTCTGTTTTGGTGCGAAAGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACTCTCGCAAAACACAATATCTTAATAGATAGGCGGCGAATTTTATGCTTTTTAATTTTGGCGTCAATTATTTTTATCAATAAATTATCTTGGAGATAAAATAAAACAGCGAGAGTTATAATATAAAATAGATAGATTCTATTTTTAGAACTAAGATAAATAATTATGACAAAAACCGATTATGCAGTAGGTTTATGAGGTTTTTTATGAAAAAAATCAATATATTGATTGTTATCTTGTTTGTGATTATATCAAGTAATGTATATGCGGAAATCTACAA # Right flank : AAAAAAATGATAATTTCGTTTGAAAATAAAAGTGTCTGCTATTAGATGACTGTTTTCAGTTATAAACAGAAGACCACCAGTAGTTGAAAAATCAATTACTGGCGGTTTTTATAATAGTGCTGGTGATTACTATTTCTTGGTTGCTTGGTAAACTTTGAATTTACCTGTTGATGCAAGCACTTCATGAGAGCCAAACACGTGATCAAGAATATCTTGATAAGGTAAGAAAGCATTGGCAACAATACGCAGTTTACCGCCTTTTTTCAAAAAGTTAGGCGCGAGACGAATAATGTCTTCTGCAGCTTGATAGCTGGTACCTAAGCCATCATGGAAAGGAGGATTAGAGACTATCCAATCATAAGTTTCTTCTACCGCAGAATAGACATTGCTTGCAATAACCCGTCCTTCTAATTCATTAACGTTTAACGTGGCAATACTGGATGAAATAGCGGCTGCATTGACGTCACAGAGTGTGAGTTTTAACATCGGGTTTTTCTTGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAAAAGTGGTCAGGTTATTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 217903-217752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBTY01000005.1 Proteus mirabilis strain T1C contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217902 29 100.0 32 ............................. GGTGAGGTAGAAATTAGGGAGTGCGGATATTT 217841 29 100.0 32 ............................. TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 217780 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATACTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGGTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGTGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCGGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227350-226772 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBTY01000005.1 Proteus mirabilis strain T1C contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227349 29 100.0 32 ............................. TGTATTTCTCAAATCTAGGATGATTAGTAAAT 227288 29 100.0 32 ............................. AAAAGTGGGAATTCCTTAAAACAACGATATCG 227227 29 100.0 32 ............................. TTATAGAGCGAGAATATGTTAACGAAAATTCT 227166 29 100.0 32 ............................. GTTGTTGCCATGAAAGCATTTAAACTGATTTT 227105 29 100.0 32 ............................. ATTGTGGTGATGATCATGAACAGTATAAAAGG 227044 29 100.0 32 ............................. TCACCAGCCACACCCAGTGGCAAGTCGTTATT 226983 29 100.0 32 ............................. TAAATAAACGAGAGGACTATAAAATGTATATA 226922 29 96.6 32 ...............G............. GGTTGAATCCCGTCTGGATCGGTAAACATGTC 226861 29 100.0 32 ............................. TTATCTGCTGTTTTTAGGTTTAAGCCCGTTGA 226800 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATTTTGTAATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //