Array 1 154239-154656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYH01000013.1 Corynebacterium diphtheriae bv. gravis strain 2225 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 154239 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 154301 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 154365 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 154429 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 154493 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 154557 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 154621 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : CAGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 63242-61808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYH01000014.1 Corynebacterium diphtheriae bv. gravis strain 2225 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63241 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 63180 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 63118 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 63056 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 62995 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 62934 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 62873 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 62812 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 62751 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 62690 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 62629 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 62568 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 62507 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 62446 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 62385 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 62324 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 62263 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 62202 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 62141 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62080 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62019 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 61958 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 61897 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 61836 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //