Array 1 17714-17981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAJ01000066.1 Ligilactobacillus ruminis strain ATCC 27780 NODE_129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================ ================== 17714 46 100.0 28 .............................................. AGGCCGCGCGAGTCGATTTGGAATCAGC 17788 46 100.0 28 .............................................. GTTCAGCGCACCCCGTTTTTGGAGCAGG 17862 46 97.8 28 ......................T....................... GAGCCGCATGCCCCAATTTTGGATCAGC 17936 46 89.1 0 ................A.....T..C...T..............T. | ========== ====== ====== ====== ============================================== ============================ ================== 4 46 96.7 28 CGGTAGACAAAAATCAGACATTCCCACCGGTTTTTGTCTACTTTCG # Left flank : GTGAGGCGAAACCCGATTAAGACAAGGTGTGAAGACCAGCCGCTCAACAAGGCGGTAGATAAGGAGGGGCGCGAGTGATCAGCGCAAGCGCAGTCACGACGCGGCACGAAATTATCATGAGCCTTGTTGCTGGTCTGAACCCGATTTAGACAAGATGCGAAGCCGAACGGTCAACTGAATAATGATTAAAATACGTGCCATGATGGCGCGTATTTTTTATTTTTGGGGCAGTCCGCCAAGATTTCACTCAAATTTTACGGACAAAGCGTCATTTTTTTACTGATTTGTCCGTAATTGACAGTGATTTTGCCAAATGCAGTGCTGCGCAGCATCTGCTCAAGCACTGCACCTGACCTCGGTTACGGGCAAAACGTTCTTTTTGGAATTTGCTTGTAATCTGAGATCACACTGCTTTGGCGAAGGTACCCGAGTAGAACATTTTTCCGATTTTGGAGGATTTTTTTTACTTTCGAGGCCGCGCGAGTCGATTTGGAATCAGT # Right flank : GTTCCGTGCGCCCCAACTTCGGGGAGTCAGGTAGAAAAAAAAACATACTGTCCCTCGAGATTCAAAGTGGATTACGGGCAAAACGGCGATTTTTAAGATCTGCCTGTAATCGAAAGGATGACAGCAGGATTTTGCTGAGACAAATGGTTATGCCCGTATAATGGTGTAAATTGATAAAAAAAAGAGAGCCAAGTGCTCG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTAGACAAAAATCAGACATTCCCACCGGTTTTTGTCTACTTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 24153-25144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAJ01000113.1 Ligilactobacillus ruminis strain ATCC 27780 NODE_377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 24153 36 86.1 39 A.....C.T.TT........................ GGTATCATATACCATACCAACGCCGGAAGAAACAATCGA G,A,A [24155,24157,24160] 24231 36 100.0 39 .................................... CGGATCGTACATGATGAATAATGGAGGCGCAAGAAAATA 24306 36 100.0 36 .................................... AATTGTTGAGATCGATTTTGATATTACGGAGTTTTT 24378 36 100.0 37 .................................... GAAGAATTAGGTGGTATCGAGCCCGAAGACGGCAAAC 24451 36 100.0 38 .................................... ATTTGCATTGAAATTAGTTCTTTTTGTTTTGTTACTTA 24525 36 100.0 39 .................................... ACGGAGTACGAACATGAATACCAAACAAACAAGTATTCA 24600 36 100.0 39 .................................... GACTTATTGGCTATGAGGATATTTTAGTGGAGCTTAAAG 24675 36 100.0 37 .................................... TATATTGATTGTGATAAAATATTTAAAGGTCGCTCGC 24748 36 100.0 36 .................................... GAAAAAGCAATCATTATCAATGAACACAATAAGGGC 24820 36 100.0 37 .................................... GTTTAGCTACATTGTACCTAATTTTTGGGTATTGACA 24893 36 100.0 38 .................................... AAGACGATCAACCATAAAGAAATATTGAGCATAATCTC 24967 36 100.0 35 .................................... AATTTGTCGGAAACGTTGTATCGCAAGAAAAACGG 25038 36 100.0 35 .................................... ATAGACAAAAGGAATTAGATAATAGTAAGTTATTA 25109 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 99.0 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 41205-42977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAJ01000113.1 Ligilactobacillus ruminis strain ATCC 27780 NODE_377, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 41205 33 100.0 34 ................................. TCATGCAACTTTTTTCTTTTACAAAATTATTACT 41272 33 100.0 33 ................................. TTTGAGTATCATGTAACGTGAGATGTTTTTCGT 41338 33 100.0 35 ................................. CAATATTGTTGAGCAATCTCTTGCTCTCATCATAT 41406 33 100.0 35 ................................. AAGAAGATATTGACCGTGGCTATGTTGACAAGCGA 41474 33 100.0 33 ................................. GTCATTAATGGTGTTATGGGTAACAAAGAATAT 41540 33 100.0 33 ................................. TGTCCGACTGTAATTAGAGGAGCTTATTAAAAC 41606 33 100.0 35 ................................. CCGGAATATCCTTTTGAGTGTCGTCAATGATCAAC 41674 33 100.0 36 ................................. CCTGCACTTCCTTGATGCCCACGTTTTCCAAGGGCT 41743 33 100.0 36 ................................. ATTGGCAGGTCAAAAGTTCAAAGTGTATACAGTAAT 41812 33 100.0 34 ................................. ACTTAATGTTGATCTGACAACACTTGGAGTTGAT 41879 33 100.0 34 ................................. AGATAGTGAGTGCGAGTGTAAGTATTTTCTAAAC 41946 33 100.0 33 ................................. GTTACCTGAATGACTTGCAACAGTCTGACCGTT 42012 33 100.0 33 ................................. GTGATGTCAACTCATTTTCATAACTTGTTTTAA 42078 33 100.0 34 ................................. ACAAACAACACTTACTAAAGTTAGAAACAATGCC 42145 33 100.0 36 ................................. CCTCAAGGTGACGTTGGTCCAGCTGGTGAAAAAGGG 42214 33 100.0 33 ................................. TGATTAAGTTCATCAATTGTCGGCTTGGAAATT 42280 33 100.0 35 ................................. TAACCATTAAAATAGAAAAAGTTGCGGTTAGGATT 42348 33 100.0 32 ................................. ACTGGCGAAGTCAGAACGATTTGTACCATATT 42413 33 100.0 33 ................................. GCTTGTGACGTTATATAATAAAAGAGTAGTAAA 42479 33 100.0 35 ................................. AATTACAATATGTAACCGACAGCACTCACTTTAGT 42547 33 100.0 33 ................................. TATGACGTCAATTAATGATGTCATGCAAGTTGC 42613 33 100.0 33 ................................. AAGCGCATCATTCTGATAACTTGCAACATCTAC 42679 33 100.0 33 ................................. GGAATTGCAATTGCACCACGTGTTCCCAATGCT 42745 33 100.0 34 ................................. GTGTGCCTAACGCAGAAAAACTCGCAATCTGTCT 42812 33 100.0 33 ................................. GCATTGCTTGTTGCATGAGCTTTATTGTTGCTT 42878 33 100.0 34 ................................. TCTCACGGTTGACAATGAGGACAAGGATTAGAAT 42945 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 100.0 34 ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Left flank : CCCTTTCAAGCGACAAGACGACGCTTGAATCCTACGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGGATGAGGATAATGGTAGAACATAAGAAAGAGAGGTCTGGAAAGTTCCGTTCTATTTTCAAACTAAATTAATGCCGGACAAAGTCGGTCAACTTGCGGATGATTTGTTCGGTATTCTATTGATATGACTTAATTTTTATGCTTCATACATTCTGTGACGGACACATTCAGATAACATTTACAGATTTAGTATCATCAATTTGATTTTAATCGTAAGCGGAAATAAGCGTTTAAGCCTCTGATATCTTGATATGATTTAAACATCAAGTATATCTGAGGTTTATAAAAACACTTACGTTGGTTCATATATAAGTAAAAACCGGATGATGTTCACAAACTAATTTCGAATCATCCGGTTTTTTTGCTGAAAATACATTTTTTTCCAACCTTGCTACTATTCATAACATCATTGATATGACATTCAGCT # Right flank : CAGCAAAAAACAGGCAATATAGCCCAATTTTTCGCATCATAATAAATAACTATAATCCTTACAACCGAAGATTAAGAAATATATTATGAATATTATTCGGCAATCATTAAAAACAAGGTGCGAATACTTCGAAAAAATATGTTCACTTTTGATTCGCAAATATTTTGTTATAAAATAAGCGTACCTTTGATATCAAAACTTTCTTTAATTCCAATGTGTTCTATCTTGTTTTTGTACTTATCACCCAAATTATAGAAACGCAAACTATCTTCATCTTTATTTATAATACCTTCTAAAGTAGCCTTAACTTGTCGATATTCTGTAGAATTTAATTGACATTCAAAAACAGAATTTTGAACCCTTTGACCGTAATTAACGCACTCTTTTGCTACCTTTCTTAGTCGTTTTCTACCAGCCGATGTTTCAGTACTAACATCATATGCTATTAAAATAAGCATAACTAACTTCACCTACTTCCAGAAAAAAGGTGGATACTCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //