Array 1 44518-43891 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZK01000005.1 Staphylococcus simulans strain 52 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44517 36 100.0 30 .................................... ATCTTTCCTAAAAAGGCGGTGCGCTAATGA 44451 36 100.0 30 .................................... ACTCTTTGCGTTTATCGAAAGATGAGCGCA 44385 36 100.0 30 .................................... CCAATTCCTCCTTTTAATTTTCTTTCGAAC 44319 36 100.0 30 .................................... TGTGTGAAGTACGCTATTCTGAAAGTTACT 44253 36 100.0 30 .................................... CTGATTCTCCTTCGCTTTCTTCACCGCTGG 44187 36 100.0 29 .................................... AGAAGCTGAATCAGGTATGAACCCTGCTG 44122 36 100.0 30 .................................... AAAGAGCGCATGCAAAGGAGGATATAAACC 44056 36 100.0 29 .................................... TTTGCCTGTACCCGGTCCGCCGGTTAAAA 43991 36 100.0 29 .................................... AGCGTTGGCTGGTACTTATAAGAATAGGT 43926 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGCGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : ACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTAAGAAAACAACAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACTCAATTACTACACGTTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGCGCTGTCGTCTTTAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 148817-149637 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZK01000004.1 Staphylococcus simulans strain 52 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 148817 36 100.0 30 .................................... GCGTGAAAGCCGAATTCGTGAAAGTATAGA 148883 36 100.0 29 .................................... AAGATTTATAACCGTTTCTCATCAAGAAG 148948 36 100.0 29 .................................... GATATTACCGGAAGTGAATCCCGCTTCAC 149013 36 100.0 30 .................................... TAGAGATTTATACTCATGTTACTAAACAAA 149079 36 100.0 29 .................................... CAATTCTTTATCATGGGCGGTCGTGGCGT 149144 36 100.0 30 .................................... AACTTTAGTGCAGTATCAAAGCGGAAGTTA 149210 36 100.0 30 .................................... ATTTATTTCTGTTCAGTCGTCCAAACTTTC 149276 36 100.0 29 .................................... TCATAAACGACACAAGGAGGTGAACGTTA 149341 36 100.0 29 .................................... CAAAAAATCGCACAAGTACAAGCAGCATG 149406 36 100.0 29 .................................... GTTTTTGTTCTCTTTTGCAATATAGAAGT 149471 36 100.0 30 .................................... CAATACCTTTAGAGATACCGCCAAACGTCA 149537 36 100.0 29 .................................... AAAAAAATCAACTATCAACGTCAATGGCA 149602 36 86.1 0 ......................A......T...CCA | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAATTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTACTGGTTTTGTTATTCCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAATAAATATCTGCAAACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAACAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : ATGAAGTATAGCTTAACAATTTATCAAGTTGGTTTAACTGGATAATTATTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTTTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //