Array 1 12899-15553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSP01000016.1 Rothia mucilaginosa strain 141_RMUC 167_321608_12442600_67+,...,141+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 12899 29 100.0 32 ............................. TCTGCAAGGGCAGTAGGGCCAGGGGTGTTCAA 12960 29 100.0 32 ............................. GAAAAGCTAGAATCTGTCGGTGTTTATGCCCG 13021 29 100.0 32 ............................. TCAGCGGCGTGACATTCTCAACCCTGGGCCGC 13082 29 100.0 32 ............................. GGCTCTAGCTATTCGGTTCAAGGTCAATAAGG 13143 29 96.6 32 ............................T GTTACGTGTCTATTGTACTGTATGTTAGCCGT 13204 29 100.0 32 ............................. GCGCAGCAGGATGCTGCCGCGGAGCTTCTGGG 13265 29 100.0 32 ............................. AGTGCCGCCCGGAACGCCTGGAAGCCATGAAG 13326 29 100.0 32 ............................. GAAGCGGAGGCGGCGACCGGCGCGCTGGGTGG 13387 29 100.0 32 ............................. CCCTCCAGCGCCTCGTAGAGCCCCCGGTCTTC 13448 29 100.0 32 ............................. AAATCGACGAACGGAACGGCTCCACGGTCGTG 13509 29 100.0 32 ............................. CCACTTACCAATCTCACGCACAGAATCACCGA 13570 29 100.0 32 ............................. CAATTGCTGCTGGAGGGCCAGAAATTGAACTT 13631 29 96.6 32 ............................A TGGTGCGGTCGGGTCTTGGTTGGGGCGGATAC 13692 29 100.0 32 ............................. TCGAACCGATAACCTGAACCAGGCCCATGGCC 13753 29 100.0 33 ............................. ACTTTAGGGGCTGGTACTACAAGGTAGGGCTAA 13815 29 100.0 32 ............................. AGCTTGAGATCTTCTTTAATGAATGGAATAGC 13876 29 100.0 32 ............................. ACAGTAAGTCGGAAACCTTACCCCAAACCGAA 13937 29 100.0 32 ............................. CGTATGACTCGACAGATTATCAAGCTCTCAAG 13998 29 100.0 32 ............................. CTCTGCCACCGTGTACCGGTTCCAGTCCACGC 14059 29 100.0 32 ............................. CCACGCGTCGCGGGGACACGCTTCTGCTCCAG 14120 29 100.0 32 ............................. GCGACAGTGTACAACTCAATACCGGCGCTCAC 14181 29 100.0 32 ............................. CACAGCCCCTAACTATATTTTTGAGTTAGGGG 14242 29 100.0 34 ............................. TGCAATGGCAGCTCCATTGCACGGGCCTGGATTA 14305 29 100.0 32 ............................. GAAAAATCAGATGAGCATCACAGCCATCGCGG 14366 29 100.0 32 ............................. CCTGAAAAGGTCCTGTACCAGCTCCCCAATGG 14427 29 100.0 32 ............................. CTCCTCTCTCCATCATGCGCCCTGACCCACGA 14488 29 100.0 32 ............................. GGCACTATCGACGTTATCGGCTCCGTTTTCCG 14549 29 100.0 32 ............................. CAACCAGCGGAATACCGAAGAAATTCCGTCGA 14610 29 100.0 32 ............................. AAGAGGGAGCTTGCTATCTTAGCCGCGCAGGA 14671 29 96.6 32 ............................T AGCGACCCGTCAGCACGCGCGCCCAGCCGACA 14732 29 100.0 32 ............................. CCAACGGGTCGATAGTGTCCAAAATCACGCAC 14793 29 100.0 32 ............................. GAAAGCATTTCCAGAGGTGTTACCGGCCCAGG 14854 29 96.6 32 ............................T ACAGCACGGCGTTAGTCTTGCGTCCGTCGGCA 14915 29 100.0 32 ............................. GCGCCTCCACGGTAGCCGACTCAGGCGCCCAC 14976 29 96.6 32 ............................T AAGTTACCGACCTGCCCGCACACCCTGAACAT 15037 29 100.0 32 ............................. GCAAACAGCCGGACAAACCACAAACCCAAGGA 15098 29 100.0 32 ............................. CCGTTCCCGTTCTTTCTCGCAAGCTTGGAGGA 15159 29 96.6 32 ............................C TTGCACGACCACCTGGTGATTTCAAACCGCGT 15220 29 93.1 32 ..AG......................... GCGTCGGGGCTTCCGTCTGCCTTGTGACCCTG 15281 29 86.2 31 ...C......T...............T.T GAGGGACGAAGCGTGCGTGCGGTGTCGTTTT 15341 29 82.8 32 G.....T....AGT............... AAGTGGGACGATAAGATGAAGGATATGAACGA 15402 29 89.7 32 ........T.T.A................ ATGTTTGGCATGACTGGTACGGCGGCTTCGGA 15463 29 96.6 32 ............................T TGGGCGGCCTCAAAGTCTTGGGCTGCGTCCAG 15524 29 86.2 0 ...........AGT..............T | T [15550] ========== ====== ====== ====== ============================= ================================== ================== 44 29 98.0 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GAGATGCTTTTGTGGGATGAATACACGGGAGGCACTGCGGCGCGTGCGAACTTTTCTGGGGATGAGTCATGATTGTGATTGTGTTGTCCGCTTGTCCGGTAAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGGGTGTTTGTGGGACGTGTGAGCGCCAGGATTCGTGAGAAGTTGTGGGCGCGTGTGCTGGAGTCGGGTGGTACTGGTCGGGCGACTATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGAGTGAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGTGTGAAGCTGATTTATCGTCCGGTAGCTCGTAAAACGGTACCGAAATCTGGGTGGAGTAAGGCGAGTAGGTATCGCCGTGCTCGTCGGGGTTAGGAGTGGCTGTTTATCGTGTATCCTGGATGGGGCTCTGGCTTCAAAGTGATTCTATTTTGCTGATGTAGGGGATAAACCCCCATGTCAGCAAGT # Right flank : TATATCAAGGGCAATAATGAAAGATGCTCAACGTATTCCCCGCACTCGCGGGGCATAGGTAAGGCCCCTCGACCCGCAGCATTAAGCTACAGGTCGAGGGGCCTCCTCATGTGTTAGCGAGTAGAAAGGTCAGCACTAGAACGCTAAGGGACCCACCCCTTACGCCACCGCCGCCTCCTTGGCCGCGGTGCCGTTGCGGGTCCACAGCAGGAACGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACATTCGCGAAGTTACCCTGAGTCAGTGCCTTCACGCACTGCACGGTGTTGTACAGGGCCCAGAACTGCCACTGCATCGTCAGCTTCAACGCGTTCAGAATGTTTGCTGACAGGGAGAGGCCAAACACAACGGTCGTAATCCAGAACAGGAACGAGGTCTTGCCGCCGTAGCCAATATAGTTCGCAAGCAGTGAGAACGCGAACGAACCCGCCACAATGCCGGCGATAATCAGCCGACCCTTCGCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //