Array 1 138418-137350 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWB01000007.1 Escherichia coli strain AF7504-1 contig_0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138417 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 138355 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 138294 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 138233 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 138172 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 138111 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 138049 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 137988 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 137927 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 137866 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 137805 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 137744 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 137683 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 137622 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 137561 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 137500 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 137439 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 137378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154924-153919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWB01000007.1 Escherichia coli strain AF7504-1 contig_0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154923 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 154862 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 154801 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 154740 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 154679 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 154618 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 154557 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 154496 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 154435 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 154374 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 154313 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 154252 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 154191 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 154130 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 154069 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 154008 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 153947 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //