Array 1 68258-68511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000002.1 Nostoc sp. FACHB-888 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 68258 37 100.0 36 ..................................... AACAGCAAAGCCATAATTGCCGATGCCATAACCGAA 68331 37 100.0 38 ..................................... GGGGGCTGGATTATTTATATTGCGTTGAAATTGTCAAT 68406 37 100.0 32 ..................................... ACGCGGGCGGCATACAAGCCAATTTCTTCTAA 68475 37 91.9 0 ...........C........C.......A........ | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.0 36 GTTTCAACACCGCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : TAGCGATGGCTGCTTACTATTCCCGCAAAATAAACTGATTGACAAAACACTGAACCTTGACAATAAAATAAGAAAATTCAACAGCGCCGCAGTTCATGCTTGTTACAAGCCTCTGTGCTGTGTAAATTTGGGTTAGTTTGACTGCTGTTAAACAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTATCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCGAGGGCGATTTCCCTGAGACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAGTGTGTCAGTTGATTTCTTTTTTAAGTATTAACTGACGGGCGATTTTGGGAGACGTGACAAAAATGCCTTCATAACTATTGTTAAATCAAGGGTTTGAAGCGCAGA # Right flank : GAGTGGAGTTAGTCAATTAATCAATTAAATTTGATTTTCAAAAGTAATGTCAGAGTAGGGTGGGTTGAAAGATGGGGCAAATTGAGAATAGAAAAGTTAAACACAACGTGAGCTTTAAAAGCTGTGTTATCGTGTGCCAAGTTTTATACATCACACAACACATCACGCTGAAAAGTTTAATGAGATTATTTTATTAATAGTTAGCCAACAGAATTTGAAGACAAAAAATTTGTTAAAAATGACATTAATCTGTTAACAGTGACAAATAATTAGTTAATGTACATATCAATCCAGATTTTGTAGCCCCATCGCAATCTTACTGTGTTTTTCAATTTGCCCCATAACTTGTTTTGCTCGTTGAATAACTACAGCTGGTAAACCCGCCAATCTTCCCGCCTCAATACCGTAAGACTTATCAGCGCCTCCGGGTTGGACTTGGTGCAAAAAGATAATTTGGTCGGGTAATTCTTTCACTGTTACCTGATAGTTAGCTACATTCG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCGCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000265.1 Nostoc sp. FACHB-888 contig265, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 1 33 100.0 39 ................................. CCCAAATATTTGAGCAGTTGTGAAAGTTTTAATGCGAGT 73 33 100.0 38 ................................. TGTTGCTCGATGAAGACAGAATCCAACATTTATTAGGT 144 33 100.0 39 ................................. CCCAAATATTTGAGCAGTTGTGAAAGTTTTAATGCGAGT 216 33 97.0 0 .............................A... | ========== ====== ====== ====== ================================= ======================================= ================== 4 33 99.2 39 CGCTTCTCCAATGAGAAGTGGAATTAATGGAAA # Left flank : | # Right flank : ACGTCTCCACTAATAATGTGGATCAATACGGTTCCGTTAGGCATTTCTTTCTTCTCTCTGCGTCCTCTGTGCCTTGGCAGTTCATTAAAAATTAGCTTGGATAACAGAGTTTTAGCCTTAACTGAACCGTCTTATAATATGGATCGGAATTTACCGCTCCAATACTTCCAACTGATAAATTATTAAAGATGGATATTCTGTCATTAAGCGCCAGCAGCAGTGTTCTGGTGGTAAAGAAGGTCTGTCATTACAACGATATAAAAATACTGGCTCATCTCTCTGAAGTCCTGCCAGCGCCACTTGTTTCCAGTCCTGTTCGCCTAAATCCCAAATCAGATGCGACCTACGAAGGTATCCTGCATTCATTAGACTAGCAAACAGCCACTCCATAATCTGCTGAATTTGTTGCGTCTCAAGCCCACTCTCGCTTTGACCGTAGCATTCGATTTCAAGCTTATTAGATAGATTTTGGCTTTATCAGTTTTAGCAGTAAGGACGGG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTTCTCCAATGAGAAGTGGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 238-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000254.1 Nostoc sp. FACHB-888 contig254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 238 37 100.0 40 ..................................... AGATTAACAATTCTGCTCCAGCAATTGATTGTTGGATGAT 315 37 100.0 37 ..................................... CATATCTAAAAAATACAGTCTGTGAACCGTTGTTAGT 389 37 100.0 36 ..................................... ACTGGTCTGGACAGTTTACAGCCAAGAACCCGACCT 462 37 100.0 35 ..................................... ACTATACTGGTTTCACTGTAAATGATGCACTAGGA 534 37 100.0 36 ..................................... CGAATCCATTCCTAGGGATTCTCATATTTCCTCTCT 607 37 100.0 37 ..................................... TAGAATCCCAATCGCCTCGGATACCTCCGATGTAGTA 681 37 100.0 38 ..................................... CTGAGACATTGACAGAAGTTAAGAAAATTCTTCGGGAG 756 37 100.0 37 ..................................... TAATACTTTTTGTAGTTATGAATCACGTTACAAACAG 830 37 100.0 36 ..................................... TGATTACTCCTTTTATTCCAGAGCTTGTACGTCAAG 903 37 100.0 36 ..................................... GCCACCAGAGCGATCGGTTGTCTTTTGGTAGATAGA 976 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 37 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TAAATACACATCTTATGATTGTGAAATCAGTTCAATATTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAACTGGATAACCACAGCGTTTCAATAATTCGGGAAGTTGCAAATTAGTTGCAATAAGGCAGGCTGAAAATGACCTTTTTTTTCGATCTGCCAAAAGCATTCCCAGGAAGCCTGCTCTGTAACAGTTTCAGACCGAGCGG # Right flank : CCTGTTTTGGTTTAATGAGGAATAATTTTCCCATACACGAGATTTCCATTAACCAAGGAGCTAAAATTTTACATCAACCGCGATCGCAGTTGTTCAAAGTAGTTTCCAACGAAGAATTCCCTTGGCAGTAAGTTAATTGTTGTTTGGCTGTTGTTCAGTCAAAGAGGATAAAAATTGCGTACAATATTGAGCATTATTTGTAAAGCCCTAAGCAATGCCGAGAGCAGCTACATCTACTAGTGGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTGACATGGGCAGATGAAACTGAATTGGTGGGATTAGTGTTTGAACTTGAGTCAAGTGCTTCTGCTTTGCTTTACTCGCAGTACACGATCGGACTGCACGCCTGGTTTCTTGAGCAGGTACGACAATTTGACCCAGACCTTTCAGCGTATCTGCATGATGGAGAATCAGAAAAGCCCTTTAATATCTCAGCTCTGTCAGGTCAACTAGTTGCTAGTGGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2640-3038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000254.1 Nostoc sp. FACHB-888 contig254, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2640 37 100.0 35 ..................................... GTTTTATTGAGGTTGGAAGCTACGAAACCTGCTAC 2712 37 100.0 35 ..................................... AATTTTTATGAATACTCAAAATATCCCAAGACCGC 2784 37 100.0 35 ..................................... AGAAAAAGTTGTTGCGGATCGTTAGTTATGTTTTG 2856 37 100.0 36 ..................................... TATCGAAAGGAATTGCTGAAGGATTTGAAGATATAG 2929 37 100.0 36 ..................................... ATAACGCTAGGGTAGGTCTGTATTAGATATCCAGAA 3002 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 36 GTTTCCACAAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : AACAAGTCTGCTAGGAGAGCGAATTGAGGAACTGACAAAATTATTTACTGCACAACGCAAACGCACAGGAGGGCAGCGTACTGATAAAATTGCTGTCACCTGGGCAACGATTTTGGCCCGGCGAGAGATGGGAGAATCACTCAAGGCAATCGCTGAAGATTTAGATATGCCGATGTTGACCGTGAAAACTTACGTAAAATTAGCCAGAAAATCGCTTAAACAGCAAAGCAGTAGTTGAGAACCTTTGCTTGTGGACAACGATTAAGTAATTGCCTTATGATTATGTAATCAGCTTAATGGGATGGCAAATCGAAGCGGGGGCTAAAACCCTGGGGGATCTGCCAAAACGGACAGAACCTTGACAAATAAATAACTACAACGTTTCAAAAATTTGGGAAGTTGCAAATAATTTGCAATAAGAGCGGCTGAAAATGACCTTTTTTTCGATCCGTCAAAATGCTTCCCAGGAAGCTTGCCCCATAACAGTTTCAGATGGAGCG # Right flank : CGAGTATGAAACCCGCCACCTAGCCAGCGATGCTAAAGCACTACTGCAAGCAATGGCTAGTTGTCCTGAGTGTTTGAGCGAACAGCAAATACAGGCGATCGCCTCTGCTGTGGCTAATTATCAGATTCCCGAAAATACGACCCCAACGCCTAAGCCAATTCCCAAGCCAAAACTCGTTAAACGTAAGAATTCTAGCAGTTGAGTGTTGCTAATTTATTTTTTAAATAAAACCTAAATAGGCTTATTTACTAGTCAGAACAAACAGCATATTACAAATGATGTTTGTAACTGTAAAATGGGAATACTAAATGTAGAAGAAAATGGCTTATATAATGCTAATTGCTGTATCAATTAAAATTTACTTAAATTGTTAATAAAACAGCTAAACTAACTTTATAGTTCAGTTTTTACTTTACCCCATTCTCAAGCTATAAACCGCTTGCCATTTCTTTAAATAGTTTCCTGGTATAGTTCTGAGGTATGGAGCAAATAGCTGGACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 9486-8868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000101.1 Nostoc sp. FACHB-888 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 9485 37 100.0 34 ..................................... AACAGACCGCCAAGCGAAACTACTTGATTAAAGA 9414 37 100.0 46 ..................................... TTATCTATTGGCGTCCTGGTTCAGTTGTTCTTTTTGATGAGGTTGG 9331 37 100.0 34 ..................................... TTATCTATTGATTTCGACGAGGAGACATCCACCA 9260 37 100.0 35 ..................................... AGCCTAGCCAAAATTGACACCGCAGGACTAATTGA 9188 37 100.0 34 ..................................... GCGTTTCTGAGGCGCTACACTTGGACGTTAGCGA 9117 37 100.0 34 ..................................... GAAAGATTATTTAACTTAGAACAAGAACGCCAAA 9046 37 100.0 34 ..................................... TGCTTTTCTAGCTTGTTTGCTTTCTGTATATAGA 8975 37 100.0 34 ..................................... GATGAGGCATCTTTAACTCAAAAAGCCGAGCAGC 8904 37 97.3 0 ............................A........ | ========== ====== ====== ====== ===================================== ============================================== ================== 9 37 99.7 36 ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Left flank : GGTTGGTCACGAGGGTGCTGGTATTGCATAGGCGTAGCCTAACCCAGGTATGGCCTTGAAGTCAGCTAACCTAATCAGGTAGGATATTTATTACAGCAGTTTTCTTTTGCATGAAGTAGAAAGTCACTGGTTTTGAGGCAGGAGGCAGCTATGCTGGAGGCAGGAGGAAGAAGAATAATTTGATTTGTGAATCCTTGGTTCTGTACCTCATTTAGTTGCAAAGTGCTGTAAGTAAGCAGCTTTACCATCAGATTAGTTAGTTTATTCGCTAAATGCGCGGATAGGTAGGTGTTCGGGAAGGAGTGACTACAAAAATGGCTGAATTGCCCTCTATGCAATAACTTGGGAGTGCTCGCATTTCTAAACCATCCGCGCACCTTATGGGGACTAGTTTTCAGCCATTTGCCTCTAGCCAAATTATAACTCCTCGTGTTATGAGCCTTAAATTCGCGCAATCGAACCTTGAAAACCAAATAAGGCAAGACTTTTACAAGCCAATC # Right flank : ATCAATGCCCATCTCAGGTTTGTCATCTAATTTACCACAAGATTGTAGCACACACTAAAATTTACCCTCCGTCAGCGCCACGACTTAACTCTCTCAATCAATGCGACTAGCTAACTTAGCCCCACACCTTTTACAAAATCCAGCATCTATATCATGGAAAGTCAAAGCACAACCAGAACAAACTGTTTCTACCTGATTAGTAGTTTTCACCACTCGCTTGATTAAATCTCCCACTTGCCAAGGAATCAGCGCAATTCCTGTAAAAATCATCAGTACCGTTAGCAAGCGCCCTAATTCAGAAATTGGAGTAACATCGCCAAATCCCACGGTTGTCATTGTGACAACAGAAAAATAGAATGCATCCAAAAATGTACCGTAATTTTGAGGATTAACCGGATGCTCTACTTGATAAATTAAACCAGAATAAATAAAAACAATTGCAAATAATGTAAATAATATTCGTGCAAAAATCATTCCATCTTCGGTGCTGATACTGGCGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 55913-55585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000013.1 Nostoc sp. FACHB-888 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 55912 37 100.0 34 ..................................... TTAAGTAACCACCTGTTGACAGGTAAATAAAACT 55841 37 100.0 37 ..................................... CACTCACGGTAATAAAGAAGATAGATCAAGCAGTGGA 55767 37 100.0 35 ..................................... CGGGCTACCCATTGGCATCTGGCAACTCTTGAAGC 55695 37 100.0 37 ..................................... GTGGTAGTGCTGGTGAGTGCGGTATGGAAGACCACAA 55621 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TGGGCTGATTCGAGGCGACTTAGGAATTAGCGACCAAGGAGAAGTTAGATTTGAAGTGACTACAGGTCAGCGATTTTAATCTCATTCGTTTTTACTCTACGTTCCTATCCTGGGGAAGGCGTTCGCGTAGCGTCTCGTAGAGAAGCGCCTATGCGTTAACTTAGACAGAATAGTGACGCATGATAATATAGGCGATCGCTGGGATAAAGCTAACATTCATGATTTTCGCGGAACCTTTGGTGGTTATGTGCGCGAAAGGGTAGATGTACAAATTCTACAGCCCCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCCCGCTAATTCACCAATTGCCATCCGCGCAATCTTTGAAATACTTACAAAAGGTGAGTTTCAACTTTTAAGGTTTTCCGGCACTCTTTCCAAACAAATTCTCTAATGCTATGATGGCTCTAGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTCAGGCTCCCGCT # Right flank : GCGTAACTCTTATTTTCCAGATGAATGTTAAAATACTCTCCAATGAAGCAACTTCAGACACGTAATCTCGACTATTTTATTGCGAGTTGATACATGAGATGACTCAGGAAGAATGGACTGCGGTCGATGATTACTTTACCGATTTGCTTGTGCCGCCCGATCCTGTGCTGGATGTAGCTCTCCAGACCAGCGCCGCAGCCGGACTGCCACCGCATAACGTTTCACCAAACCAGGGCAAACTGCTGCTGCTGTTGGCGCAAATCCAAGAGGCGCGAACCATCCTAGAGATTGGCACGCTAGGCGGCTACAGTACTATCTGGCTAGCACGGGCGTTACCCAGCGACGGCCGTCTGATTACGCTTGAAGCTAACCCAAAGCACGCCGAAGTCGCCCGTGCCAACATCGCCCACGCTGGTCTATCCGACATTGTTGACCTGCGCCTCGGACAGGCACTCTCTACGCTGCCAGATATCGCCGCAGAGGGTCATACATTTGACCTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 24990-24446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000041.1 Nostoc sp. FACHB-888 contig41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 24989 37 100.0 36 ..................................... AAATAAATCCAACCTTCTATTGTAAAATCACCCATT 24916 37 100.0 35 ..................................... TTATAAATACAATTTACTGCCCAGAGGAGAAGCAG 24844 37 100.0 33 ..................................... TTCGATACGGCTAAATTCATCTACTTGGCTTTC 24774 37 100.0 37 ..................................... AATGAAAAGCGATATGCTGCTATTAAGCCGTTTTTAT 24700 37 100.0 36 ..................................... GTAGCGTATGAGGAAGGCCCCCTAAAGTGGATTCAA 24627 37 100.0 36 ..................................... AGCACACATATATTGTAACTAACTCGTTAATCTACA 24554 37 97.3 35 ......................G.............. ATTTATAATATCCTGTGCAGCTAAGGTTAGTTGCT 24482 37 83.8 0 ...........................A.G...TTTG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.6 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCCGTTCTCAAGTCTTACGGACAATGGATGCAACTGAGTGTGTTTGAGTGCAATATCACTTCTACTCAGTATGCTAAACTGCGATCACGTTTAGCTAAATTGATAAAACCCGACACTGATAGCGTGCGCTTTTATTTTCTGTGTGGCTGTTGTCAGGGAAAAATCGAACGTATTGGCGGAGAACAGCCACGAGACGAAACAATTTTTTTTGCTGAGTCCTCTTCTGGCTAGGTTACTGCATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGCCCCAAAAAAGTGCTTATATCCCAACTATAATAAGGCTTTCAACCCATTAGTCGTCTAATCCTCATCCGCGCAATCTCTGAAAGGCTTACCAAAATACAATTTCAGCCTTTAAACTTTTCTGGCACTCTTCCCAAACGAATTCTCTAATGCTATGATTGCCCTTAAATCGCGCAACTGTACCTTGAAAACTAAATACAGCTTGGGTTTTAGGCTCCCGCC # Right flank : AAAAGTGGTTGGCTGTGATTTTAGGCACTTATTGATCCCCCTTAAAAAGGGGGGAACCGGAATCAGAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAACGTTTTGCTACCAAGATGAGGACTTTTCAAACATCCTCTCAGAGGCTAGCCGATAAATCTTAAATAGCCTCACCGTGGAGTTACGAGGATCGAGATTTCAGGTTTTGAGTGCGTAAGCCCTGTTTCTAATTAGCTTTGCCATTACCCTGAAAATTTAACAACTGCTCATCATTGACCCAAATTGCTTGTTGAGGCACAGAAATAGAAATTCCGGCTTGGTCTAGAGCAACTTTCAGCCGACGGCGAAACTCCCGTGCTACATCCCATTGTTTGAGGGGCTGTGTTTTAATCCAGACGCGAACAATCAAACCGCGATCGCCAAATTGATCTATTCCCAAAACTTGTGGCGGTTCCAGAATTTGACGCTCCCATTGCGGATCTTTGTCCATCTCAAAG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1580-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000076.1 Nostoc sp. FACHB-888 contig76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 1579 35 100.0 39 ................................... CAGCGTTGTACCGTCTCCTCCTAAGACCAATGCCAAGGT 1505 35 100.0 42 ................................... CTACCGGTGGGTACGTCGTCGGATTCCTCCCCGCCGCCTACC 1428 35 100.0 41 ................................... CTGCGGATTCAGATACTAAGTTCATTTTCCTGACTGTTTGA 1352 35 100.0 38 ................................... CGTTTCAACTATATTTCCCCGGATGAAAAGGTTTAACT 1279 35 100.0 36 ................................... CGAGCGATCGCTTCTCATGCTGCAAATATACAAGAG 1208 35 100.0 39 ................................... CCTTTTCTTGACCTCTAAAAGGTAAACTTAAATTTACTG 1134 35 100.0 37 ................................... CTGGAAAGTACCAATACTCGTAATTCCAGAAGCTTTG 1062 35 100.0 47 ................................... CGGCAAAAGACTGCAACCTGTAGCTAATAATTTACGGGGTGCGAGTA 980 35 100.0 38 ................................... CATTTCAATGTTTACATGGTTCGATTTCTCTAATACAG 907 35 100.0 33 ................................... CTGCGCCAACTTGTGGATACCACTACTGATAGT 839 35 100.0 36 ................................... CGTAATCGAAACAGCGGAAATCGTCATACCGGACGA 768 35 100.0 41 ................................... CGCCCAGTTGTAAGCTGCTTTAATCTGTGACATAATATTAT 692 35 94.3 39 .............TG.................... CTTTCTGAATAGTACCAGTTTAGAAACAAATGGCGATCG 618 35 91.4 39 ..........T..TG.................... TATGAGTAGCAGTAAACAGCTTGTAACGTAGCTTTGAAT 544 35 88.6 44 ...A......T..TG.................... TTTTGCCGCTAACTTTGAAACATGCGATTTCCCGCATCCGGGAT 465 35 88.6 41 ...A......T..TG.................... TACATATTAGACAAACAAGAGAGCAAACAGACACAAGAGAG 389 35 88.6 39 ...A......T..TG.................... TACCAGTACTGGAACGACTGCAACCGTAACTACTACCTT 315 35 88.6 39 ...A......T..TG.................... TTAGATGGTCTCGATGCCGACCGCCCAGGCGGCAATCAG 241 35 88.6 43 ...A......T..TG.................... CTTGATTAGTAAGCGGGAGTCAGAATCTTGTTGATGATTTCAG 163 35 97.1 35 .............T..................... CACCATATTCTGAACCGACTTCATAAAGCATTGCA 93 35 94.3 0 .............TG.................... | ========== ====== ====== ====== =================================== =============================================== ================== 21 35 96.2 39 GTCGCTTCTCCAACAAGAAGTGGAATTAATGGAAA # Left flank : ATTGAAAAGCGCTATCACCAGATTGATCCTTTGGTTGTAGGTTCACTTGATCCGAGGAACCACTTATATCAGCAGCTTGTTTACCTATACAGCCCCACCAAAGCCGTAAATTATCTTCATGTGAATGTAAACATTGTAACTGCTCTATAATTTCAGATGCTTGAGTAACACTCGTTGGCTCTTGCAACAAAGCGTAAAGCTTGCGGTGATCGACGTTCATGCACTTGTATCTTAAGAGACTAACCTAGTGTAATCCACAAAAAATTTAAATCAAGTGGTTTTCATGCGAATGACAAATCTATAATATTTTTTATTCTCCTTGCGACGGGGTGAGCAAAAGCTGGAAATGCCTATTGTCTCGTTTACCCGGCCGATGTCCTGCTGTCTAAGGGTTTCAGCATTTTTATGTGTATGTAATATGGTTGAATTTAGCTATAGACATATACCCCGCCGCAAATGGCATCTGGACATCAGGCTGCGTAAGGAGTTAAATAAGAGGG # Right flank : ACCCAAATATTTGAGCAGTTGTGAAAGTTTTAATGCGAGTCGCTTCTCCAATGAGAAGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCCAACAAGAAGTGGAATTAATGGAAA # Alternate repeat : GTCACTTCTCTAATGAGAAGTGGAATTAATGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 13031-13586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000076.1 Nostoc sp. FACHB-888 contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 13031 36 97.2 39 A................................... TGTTCTCTGCTGAGGACGTAGCATGGCAGTTTAGAGGTA 13106 36 100.0 35 .................................... TGTCTCTCTTAAAGCGTAGCGTTCCGAGTGTAGTG 13177 36 100.0 47 .................................... GCTTTCAGCCATCACAGACTGGATGATCTCCGCCATCGCTGGAGAGT 13260 36 100.0 36 .................................... AATACGTACTGTGACCGTCGTGAGACAGACACTTTA 13332 36 100.0 39 .................................... CTTGAAAATGCACGTAGATGACGCTTTATTATCTATCCG 13407 36 100.0 38 .................................... AAGTTTAGTTCCCAGGTTTTAATAAAAAGTTTTATGGA 13481 36 100.0 34 .................................... CCCGCTTCGCGGTTCTCGCCGCGGTCGGCGACCC 13551 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 8 36 99.7 38 GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGAC # Left flank : ATTACAAAAGCTTTCTGCTGCTAGCGCAGGGATTTTTTTGGGGTATAGTGCGAGTGACCAACGTCAGTTTCTCAGCCACGATAAACAAGAACGTTCTCAGGCTTGTGTGACAGTAGAACTGTGGTTTAATGATGCTATATTCCGGTTTATTACGGAAGGAACTAAGAGATTCCCTGCAAAACAAATGAAGATGTCTCCACCTGTAGAGGGCGGAAGATTAATGTTACCTAAGTCAATTTTCTGCCTGAAGAAAACCACAAATAAACGGTTTCCCAATCGCTTTCGGGTGGTACTGCCTACATGGTACTTGGATGATGTGGAGTTTCTGCGGTGGATTGTTGGTTTTGGTGGTAATGTTAAGGTAGTGCAGCCAGAGAAATTGGTAGCTAAGATTAAGGGAATTGGTGAAGCGATTTTAGCCGTTTATAAATCGCAATAAATAATCAAATATCTTTCAGAAGCTTTCAAAAGGTCGGAATATAAACATTCCGACCTTTTGC # Right flank : CCCCTCCTATTTAAACTCTTATGGTGTCTGATGTCCAGATGCCATTTGCGACGGGGTCGGTGAGTAGAGAAATTTTTACCTTTACAAGTAAATATAAAAACCCTGAAATCCTTATACAGGAGTACATCGGCCGGGTCAACGAGAACATAGGCATTTCCAAGTTTTGCCGACCCCGCCGCACCGAAAGTAAAAAACTTAGTAAATTTGTCATTCGCATGAAACCACTAGCAGGATCTCAAACTAGTCCCTACTTTTAAGGTATAGAGTAAACAGACACAACCATCAAACATTATATTTATGTATATCTCTTCCCGCGCTGCATTAATCCGCAACCTTGGTGTCGCCTTACTCAACGGCTCTATTACACTAATTATCCTGTTAATTGCACCTTTAGGGCTAGCAGCAGTAATCATCAATACAATCTTGATTACCGTCGCCAGCTTTGTGAACGCTACAGCAGGTGATGCTGTAGTGAATTTTTTGCAACCATCCCAAATTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 417-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000087.1 Nostoc sp. FACHB-888 contig87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 416 37 100.0 36 ..................................... CGATATTCTCGATTCTCGATGGATTAGCAACCAGGG 343 37 100.0 36 ..................................... TATTGGCAAGGCAATTTGGGACATAGACAAAAATCA 270 37 100.0 37 ..................................... TTAAGCATTGGTTATCAATGAACAACCCGCACTCTGA 196 37 100.0 36 ..................................... AATCCATAAACGCGGCTGGCACTTGTAAGAGTATCA 123 37 100.0 38 ..................................... GTTTGAAGTAACTTGTCGCCATACACAAAGTTTGCAAG 48 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 37 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : CGATGACTACTCTGTTCTACCTTATAATTTATGATTTGCCTGATAATAAAAAGGCGAATAAGCGACGAACAAAACTCCATAAAATGCTCTCTGGCTATGGAACTTGGACGCAGTACAGTGTGTTCGAATGTTTTTTAAATGCTGTGCAGTTTGCTAAATTGAAGGTGCAAGTTGAAAGCTTGATTAAACCCACTGAAGACTCAGTGCGTATTTATGTTTTGGATGCTGGAGCAGTACGTAAAACTATTACTTACGGCTCTGAGCAACCTCGACAGGAGGAGACGATCATATTATGATGCTAGTAAGATTTTTGGCAGGGCAAAGCACGGGCGAAAACCCCCCACCTCCCGCCAAATCGCCCGAACCTTGACAATTCAATAGTTTCAACACTTTAAGTACCAATATAGAGCCTCGTCATAAATGCCGGAAACGGACTTTTAAAGTAGCCCTGCCAAAAACAGTGTTGGGAATGCGTCTGTAATTAGCTTCTGGCTGGCGGA # Right flank : CGTCAATGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 11928-12322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000087.1 Nostoc sp. FACHB-888 contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11928 37 100.0 36 ..................................... ATGTGCCGTACACCAGAACCAATAAAATTTTTAGCT 12001 37 100.0 33 ..................................... GATGAATAAAAAAGTAGAGGATGCCCCCTCTGC 12071 37 100.0 33 ..................................... GCTCAATAGAGTTTTCCAATGGCAGTGAACCAG 12141 37 100.0 35 ..................................... TCCGGTAGACACCCCAAGAAATATCATTAGGAAAG 12213 37 100.0 36 ..................................... GCAGAGCATTAGCTAGGGCTGCGCGTTGCTTAAGTT 12286 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.5 35 GTTTCATATTAATGATTTCCGCTTGCGGAATTGAAAC # Left flank : GGGCAAATGCTAAAATTATTAGCCCCCAAACATTGGCTGATGAAATAAAGAAAGAGTACAAGAAGATATGGGAACAATATTCCCTAGAAGAAAACAGTGAAAAATCAACTGATTCAAGAACAGATTCAAAAATATGATATTAATGATAAAGATACCTCAAGAGGTAGCCCAACGGTAAGCGAAAGTCATGGCTCTTGCCACAGACAAGCGAAAACTGTAACTTATAATTTTTATATTTGAAAATCACTAATCCTGTTTTTCAGAAAGTCTGTACCTTGAAAATTAAAAATCTAGTATATTTTCAAAACTTTTTGGCAGGGCGAAGCACGGGCAAAAACCCCCTACTCCCGCCAAAACTCTGTAGCCCATACCCTGAAACGAATGTACTTTGTTAACCTCAATTGATTTTCACTTTCATTGGTGGCTGAAACGAGATTTTCTAGCTCCCATGCCAAAAATGCTTGTGGAAAGCAAGATTATCAAGGGTTACATATTTCGGG # Right flank : CTTTACAATATTTATTTTTCATAGCATTCATTCTTAACATGAGCGCTCGTTACTCCTCCCGCTCAACCAGCACCCCATCAACAATCGTAATCCCCCACTGTGGAAACTTCACCAGTAATTTCTTGATCATTATCACAAGTGCCGGATCATCATTCCAACATTCCTTCAGAAAACCAAAGCCCGGATTCTGCCCCGAATTCGCCGCCACTTTGAGTTTCTGCATACGCTCCGGTCGCACATTTGACCTTGCTACAATCGCCTCATGCGACCATTTTTCAGGAATTAGCACGGGCGGCACGGAACTTTCATCTTCATCAACTGCTTTGACTTCTACACCTAAAACTAAATTTTCAACTAACAACGAAGTGGGATTACCTGCTTCTACTTGCGCCTGTGTTTCATGAGCGATCGCTTTCTTAGAAGAAAATTCATTTTGAGCAACGGGCGCGGCGGAACAAGTACCTTCATGAAAGTCTTTTTGCTCAACGCCACAATCCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATATTAATGATTTCCGCTTGCGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.80,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 4473-5827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQM010000161.1 Nostoc sp. FACHB-888 contig161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4473 37 100.0 36 ..................................... AACCTCTGGACTTGGATACTTTAGCCGTTCGCCTGG 4546 37 100.0 39 ..................................... GCTCGATGCCCCCTTTGCTTCTATTTCTGCAAGCTTTAA 4622 37 100.0 36 ..................................... GTGTAAACGAACCATTTGATAGAACCGGACATATAA 4695 37 100.0 37 ..................................... GCTGTATGCGTCGAGCGCTTGACGATAACGCAGCTAA 4769 37 100.0 36 ..................................... AATTTAAGTATTCACACAAGTTTCGCCAGCTATAAA 4842 37 100.0 37 ..................................... ATGCCCCCTTGATTTGCACTTCAAATTCTCGTGCGAT 4916 37 100.0 35 ..................................... TCGTGGTTATTTGTTCGCCAAATAATCTCACCTGG 4988 37 100.0 36 ..................................... TTTTTTGTTTATATTAAATCATTCGGCTAAAATCAA 5061 37 100.0 35 ..................................... TTATAACAACAAGCTTGTCCATAAGCTTGATAAAT 5133 37 100.0 37 ..................................... ACTGCTTAATCAACCTTTCTGCAAGGGCTATATCAAA 5207 37 100.0 37 ..................................... ATAAATATTTGAGTGAGTTGTTCATAATCATCTTCCA 5281 37 100.0 35 ..................................... AAGAAATTCTCGACATTCTCGCGCATGGCAATTTG 5353 37 100.0 36 ..................................... TTGTAATCAGTGACAGCCTGTACATAATCCTTGATG 5426 37 100.0 36 ..................................... TAGATTACCCATCTCTGTCGGTTCTGCTTGACTCAA 5499 37 100.0 36 ..................................... TCAGCAGGAGAAAATAGAGCTTCTGTATTAGCTGGA 5572 37 94.6 36 ........A..........T................. TCACCAACAAGCGTAATAACCGTACCTTCACCCCAA 5645 37 81.1 35 ........A.....TTA....GT.A............ ATAAACAAGAAATATTTCTCGTATGCTGCTGGATA 5717 37 86.5 37 .....G..A.............A......G......A CTGGGGGGCTGATGTTAGGTATCGGTTGACCTGGAGG 5791 37 81.1 0 .....G..A..........T..A.T....G......A | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 97.0 36 GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : GTGGGATGGCGAACACACAGTTGGGTTGCAACACCTGAAATCATACGATTACTTGCCCCAAGAGTGTGAGCAGATGCAGGTGATTTGCAATCGCATCAGTCGAGTGTATTCAGACTCACTGGAAGAGACAGCCAAAAATCTGTTGCAGTCGTTGGGTAAAGTGAATCGTCCTTATTTAACGGCTATCGAAGAGAAATTGTTGAGTTTGATTGAGCGAGAATACGGGCTTATAGATCAATCTCCACAAACTCATAGACAATAATAAATACACATCTTATGATTGTGAAATCAGTTCAATATTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTTCACAGTTTCAGTGCCAAGGGGAGTTAAGAATTAGTCGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTTCGCCAAAACGCTTCCCAGGAAGCCTGCTCTGTAACAGTTTCAGCACCGAGCC # Right flank : ATCTTCAAATTAAGCAAGCCTTTCCTGGCACAATTGATTAACAACTCTTTCGATTTCTTGTGTCATCCAGTCAGATCCGGTCTGTTGGTAAACCTGAACTAATGATTGGTAAAACCACAAAGTTTTTTCTCGACCAGCACTAAAATTAGTCCAGACGACATCTCCACATTGTTGCCAATCAGCTAAAAGCGATCTGGAATTATGTAGTTTGTCAGCCAGAGAAACCAAGCGTACAGAAGGTGAAGCAGAACGGAGATTATTGAGGTAACACTGCTTACGTTCTTGCCAGGGAGGTTTAGGAGGTGTGTCCCACTCAGTACAGCCATCGATAATAGCTAAAACTGTTTCACCAAAGAGTCGATGGATATCTTCACGAATGGGTTTGCCGCCTTGGTCTTCGACTGCATCATGCAAAAGAGCAGCGATTGCTTCTTCTTCCGTGCCTCCAGCTTCTAAAACCAAAGCTGCGACACTCAACAAATGTGAAATATAAGGAACGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //