Array 1 28771-27478 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHB01000023.1 Lacticaseibacillus rhamnosus strain RI-004 20150702.X-R4_S19_R1_001_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28770 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 28704 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 28638 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 28572 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 28506 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 28440 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 28374 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 28308 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 28242 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 28176 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 28110 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 28044 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 27978 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 27912 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 27846 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 27780 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 27714 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 27648 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 27582 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 27516 36 83.3 0 .......................AA.A....G..AA | T,CA [27481,27487] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //