Array 1 38-337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016671.1 Neisseria meningitidis strain M22783 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 104 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 170 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 236 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 302 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTACAATAGGTCAAAGTGTCAGGCAAATTTAAAGGTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 2179221-2180510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016671.1 Neisseria meningitidis strain M22783 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2179221 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 2179287 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 2179353 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 2179419 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 2179485 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 2179551 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 2179617 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 2179683 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 2179749 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 2179815 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 2179881 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 2179947 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 2180013 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 2180079 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 2180145 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 2180211 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 2180277 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 2180343 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 2180409 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 2180475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTCATAGATCGATGCATGAGGTATTTCATGGGTTGTAGCTCCCTTTCTCATTTCGCAGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //