Array 1 29611-28910 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_APAL01000098.1 Salmonella enterica subsp. enterica serovar Manhattan str. CFSAN001078 CFSAN001078_19000002, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     29610	    29	 100.0	    32	.............................	GAAAAAAGCAAAGGGGGAGTTAGATGCGCTTG	
     29549	    29	  96.6	    32	............................A	ATAGCCTCGTCGATTGGCTGACGAATAAGCGC	
     29488	    29	 100.0	    32	.............................	TTCATCAGGTAGCTGGCTCTCATGCAGCTTCC	
     29427	    29	 100.0	    32	.............................	GATACGCTCATCAAATCCAATCCGCATAGACG	
     29366	    29	 100.0	    32	.............................	TTCATCAGGTAGCTGGCTCTCATGCAGCTTCC	
     29305	    29	 100.0	    32	.............................	ACGATTTCGAACGCGTCAGCGGTCCTGACTAC	
     29244	    29	 100.0	    32	.............................	CCAACAGACAACCAATGCGCAGGGGTAAGGCG	
     29183	    29	 100.0	    32	.............................	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA	
     29122	    29	 100.0	    32	.............................	GCTAAAACGGCGCTTGAGAACAGTATCAATAT	
     29061	    29	  96.6	    32	..........T..................	CTTCATCTCGCAGTACGTAAACGCCTGCATCA	
     29000	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA	
     28939	    29	  93.1	     0	A...........T................	|                               	A [28912]
==========	======	======	======	=============================	================================	==================
        12	    29	  98.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   |
# Right flank :  TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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