Array 1 154-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBX010000053.1 Streptococcus oralis strain E697 NODE_119_length_206_cov_0.610687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 153 36 97.2 29 ......................T............. TAATGCACGTTTTGACCATCAAGATTAAG 88 36 100.0 30 .................................... AAATCTCCAAAAATCCATTTCTCAATTACT 22 22 61.1 0 ......................-------------- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 86.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CAAGATTTAAGTAACTGTACAACAAATCTCCAAAAATCCATTTCTCAATTAC # Right flank : A # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 301795-303082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBX010000001.1 Streptococcus oralis strain E697 NODE_1_length_569251_cov_76.090868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 301795 36 100.0 30 .................................... AAATCTCCAAAAAGCCATTTCTCAATTACT 301861 36 100.0 29 .................................... TAATGCACGTTTTGACCATCAAGATTAAG 301926 36 100.0 30 .................................... AAAGGGCAAGGCTTAAATGCCCGCCCTTAT 301992 36 100.0 30 .................................... TCAAGATTTCAAAGACATCCAGAACCTTAT 302058 36 100.0 30 .................................... TAAAGACCAAAAGTAGTAGCATTATAAATA 302124 36 100.0 30 .................................... GTAACTTTTCATCGTGCAGCTTATCCAGCA 302190 36 100.0 30 .................................... CTAACGAGGATATTGACGAACGGATTGACT 302256 36 100.0 30 .................................... TCCTACTTCAATTACCCAAATTACATTTTT 302322 36 100.0 30 .................................... CTACTCTTGACAACTTCGACACACCGACTG 302388 36 100.0 29 .................................... TAATTTCAAAGGGGGAGGAGATGCTCCTT 302453 36 100.0 30 .................................... GTCAATGTCTAAGACAAGACTATCAGAATG 302519 36 100.0 30 .................................... CATGATTTCATCTTGCTGACCTAAACGGCG 302585 36 100.0 30 .................................... GAGTCGCAAGAGGTACAAACTGGGCTTCAA 302651 36 100.0 30 .................................... TAGCTATTATAGTTATGAGAAACTAACCAG 302717 36 100.0 30 .................................... ATTATGATGTGACTATCACTGCTAACTCTG 302783 36 100.0 30 .................................... GTGTTAAACCAATTTTGTTTGTTAACTTTT 302849 36 100.0 30 .................................... AGGAAGCTCAGAAGATTATCGCAGATGCGA 302915 36 100.0 30 .................................... CTTGATAAGCAACCGTATATCTGGCAACTT 302981 36 100.0 30 .................................... ATCTTGGACATCGCAAGTTCCTGCGCTTAT 303047 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTAGTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGAGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTTTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAATTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGTGTTTTGATAAATTATTTCTAATTCTAAGATGAAATAGATAAAACCCGCTCAGTTGAGCGGGTTTCGTCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //